| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5617 |
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| Symbol | |
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| ID | 4042481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 2373890 |
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| End bp | 2374951 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637981036 |
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| Product | Squalene/phytoene synthase |
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| Protein accession | YP_587745 |
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| Protein GI | 94314536 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAATC CGAACCGGGC CTTTCTGCTC GGCCCGCTGC TGAAGGGGGT TTCCCGTTCG
TTCTACCTGA CGCTTCGCAT CCTGCCCGAG GGCATGCGCG ACCCCGTCGG CCTGGCCTAT
CTGCTGGCAC GCGCCGCGGA CACCATCGCG GATACCTCGC TGATTCCACC CGTGCAACGA
CTAGACCTGC TGCTGGCGCT ACGGCAGCAC GTCAACGGCA CCCAGAACGA CGGTTCGCTC
GCGCAACGGC TGAGCGCGGA AGTTGCCAGC CAGCAAACCC AATCCGACGA GAAGGTACTG
CTGGAATCGA TCGGCCCCGC GCTTGGCGTG CTGAGCCAGC TCGATGCATC TGATTGCACC
GCCGTCCGCG GTATCGTCGA TACGCTGACC GAAGGCATGG AATTCGACCT GCGCACGTTC
CCCGACGAGC GCTCGGGCCA GGTGGCCGCG CTGCGGACGA TGGACGAGCT CGATCGCTAC
ACGTATCTCG TGGCCGGTTG TGTGGGGGAG TTCTGGACCA CGATGACCTA TGCCCACCAG
CCGGGCACGC TGACGGCAGC GCCCGAGACG ATGCTGCGCC GAGGTGTCCG CTTCGGCAAG
GCATTGCAGA TGGTCAATGT GCTGCGTGAT TGCGGTAAGG ATCTGCGCAT CGGCCGGTGC
TATCTGCCGA CCGAGATCCT GGAGCGACAT GGCATGACGC CACGCGACCT GATGGACCCG
GCCAATGCGC TGCGCGCGCG GCCAATTCTG GACGAACTGC TGCATGTCTC GCTCGCGCAT
TTCCGCGAAG CGATGGCCTA CACGTTCGCG ATTCCACGCA CGGCAATCCG GCTGCGGCTG
GCCTGCCTGT GGCCGATCCT GATTGGCCTG GAGACGCTGC TGCTATTGGC CGGCAACAAG
GCCTGGCCCG ACCCCGCGCA CGTCTCGAAG ATCCCGCGCG GCAAGGTGTA CCGGGTGCTT
GTGCGCAGCA CGGCAACGGT CATGTCGGAC ACGCTGCTGC GGCGCTGGAT GGAAGACCTG
ATCGCGCAGA TCGAGGCCAG CCTCGACGGT TCCACCCGAT AG
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| Protein sequence | MPNPNRAFLL GPLLKGVSRS FYLTLRILPE GMRDPVGLAY LLARAADTIA DTSLIPPVQR
LDLLLALRQH VNGTQNDGSL AQRLSAEVAS QQTQSDEKVL LESIGPALGV LSQLDASDCT
AVRGIVDTLT EGMEFDLRTF PDERSGQVAA LRTMDELDRY TYLVAGCVGE FWTTMTYAHQ
PGTLTAAPET MLRRGVRFGK ALQMVNVLRD CGKDLRIGRC YLPTEILERH GMTPRDLMDP
ANALRARPIL DELLHVSLAH FREAMAYTFA IPRTAIRLRL ACLWPILIGL ETLLLLAGNK
AWPDPAHVSK IPRGKVYRVL VRSTATVMSD TLLRRWMEDL IAQIEASLDG STR
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