| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4960 |
|---|
| Symbol | fimC |
|---|
| ID | 4041822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1628874 |
|---|
| End bp | 1629578 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637980381 |
|---|
| Product | pili assembly chaperone |
|---|
| Protein accession | YP_587091 |
|---|
| Protein GI | 94313882 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0268456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.337439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGCCTTA CGGGTTCTGC AGCGCACGCC TCGGTGGTCC TGGGCGGCAC GCGCGTCATA
CTCGACGAGA AAGACAAGGA AGCCACGATC CGGGCATCCA ATGAAGGCAA TACGCCGGCA
TTGATCCAGA CGTGGGTGGA CAAGGGCGAT CCGAAGGCTT CGCCGACATC CATCGAAGTG
CCATTTACGG TGATGCCTCC GGTGGCGCGT ATCGATCCGA GCAAGGGGCA GACACTGCGC
GTGCTCTACA CCGGCGAGCC ACTGCCAACG GACAAGGAGT CCGTGTTCTG GCTGAACGTG
CTGGAAATCC CCCCGAAAGC CACGGGTGAC CTAGCGGAAG CCAATCGTCT GCAACTTGCG
TTCCGCACCC GCGTCAAGCT CTTCTACCGA CCCACCGGCC TGGTGGGCAC CGCAGCGGAA
GCTCCGTCGC GCGTGACCTG GCGCATCAAG CCTGCGGGCA AGACACTGGC GCTTGAAGCG
ACCAATCCGA CGGGCTATCA CGTCTCGTAC GCCGGCATGG ATGTGTCCGC GGGAGGCAAG
ACGGTTCGCA ATCAGGAGGG CGGCATGATC GGCCCCGGCG AAACGAAGAC GTTTCCTCTC
GATGGTGAAG CGGGTTTGGG TGCCAATGGC AGCGTGCACT ATCGCGCGAT CAATGACTGG
GGTGGCCCGA TAGAGGGCGA TGCTCCGGTA GTCCCGGCCA GTTGA
|
|---|
| Protein sequence | MGLTGSAAHA SVVLGGTRVI LDEKDKEATI RASNEGNTPA LIQTWVDKGD PKASPTSIEV
PFTVMPPVAR IDPSKGQTLR VLYTGEPLPT DKESVFWLNV LEIPPKATGD LAEANRLQLA
FRTRVKLFYR PTGLVGTAAE APSRVTWRIK PAGKTLALEA TNPTGYHVSY AGMDVSAGGK
TVRNQEGGMI GPGETKTFPL DGEAGLGANG SVHYRAINDW GGPIEGDAPV VPAS
|
|---|
| |