| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4514 |
|---|
| Symbol | int |
|---|
| ID | 4041373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1117959 |
|---|
| End bp | 1119638 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637979936 |
|---|
| Product | Tyrosine-based site-specific recombinase |
|---|
| Protein accession | YP_586648 |
|---|
| Protein GI | 94313439 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.197712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.108767 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATC GCCCGACCGC CACGCACATG GACTTTCCCG ACGCCGCTGC CCTGGCCGCC
CTGCGAGCCT GGCATGCGGG ACTTTCCACG CGTGACGCGG TCTCTCGGTA TCTGGACGAT
GCGCGGGCCA CGGGCCAGTC CTCGCGCGGG ATGGTGAGCA AGATTCGCCG GCAGCTTGCC
GCCTATGCGC GCTACCGGCT GCGTGAAGAT CTTGCGCAAT TGTTCGAATT CCCGGCCGCC
GAACGGGCGG CGAAGGGTAG GGAAGCAGAC CACGCAATCG AAACACTCCG TGGCTTGCCG
CCTCCAGCAC CGGCGATTTC CGACGATATC GGCCTGTGGC TGGCACCGAC TGCCGTGGAG
GCCCTGCGCG CTTGCGACAT TCACACGCTG GCTGACCTCA CTGTGCGAAT CCCGCGCCGG
CGCCAGTGGT GGCGCGGCAT TTCCGGGCTG GGAGTGGCGG GCGCCAGGCG AATCGAGGCG
TTCTTCGCCG GCCATCCGCA ACTCACGGCT CGCGCGCGGG CGCTAATCGA AGCCGAGCCG
CGCGGCGTGA TCGTGCCCTG GGAGAAGATG GGGCGACTGC CGCATGAGGT GGACGGCTCG
CTCGGCCAGT TCCGCGCGCC GCGCGAGACC TCCACGCTGA ACGCGGACAA CGACTACGCG
GCTGTGCAAG CGTGGCTGGG GTTGCACGAA TCGCCGTCTA CGCTGCGTGC CTATCGCAAG
GAAGCCGAGA GGCTGATCCT CTGGGCGATC ATCGAGCGCG GGCGGCCGCT GTCGTCGCTG
ACCACCGAGG ACGCCACGGC CTACCGGAAC TTCCTGCGCC AACCCGCGCC GCGCGAACGC
TGGGTAGGGC CCGCCCGGCC GCGTGGCGCC ACGGATTGGA AGCCGTTTGC TGACGGGCTG
TCGCCACGCT CGGCAGCCTA CAGCCTGCAG GTGCTTGGGG CGCTGTTTCG CTGGCTGGTG
CAGCAACGCT ACGTGCTGGC CAACCCGTTC GCCGGCATCA AGGTGCGGGG CGGCGCCAAG
ACGGCCGCGC TCGATGTATC GCACGCGTTC TCCGAAGGGG AATGGCTGCT GACGCGCAGC
ATCGCGGATG GCCTGGAGTG GTCATACGGC TGGGAAGCCT CCGCCGCCCA ACGGCTGCGC
TTTATCCTGG ATTTCACATA CGCGACGGGA CTGCGGGCGA GCGAACTGGT CGGCGCCACG
CTGCGCAATG TCGAAACCGA CGTGCACGGC GATCACTGGT TGCGGCTGGT GGGCAAGGGC
GCGAAGGCGG GCAGGGTGGC GCTGCCGACG ATGGCCCGCA ACGCGCTTGA CCGCTATCTG
GTTGAGCGGG GCTTGCCGGT GACACGCGCC CTCTGGGACC CGACGACGCC GATCGTCGGC
AATCTAGGTT CCGACGAAGC CGGCGGCATC ACCGGCGCGC GATTGTGGAT GGTGATCAAG
CGCTTCTTCG GCACCGCCGC CGACCAGCTC GAAGCCGAAC GCCCGGCCAC CGCCGAAAAG
CTGCGCCGCG CCAGCCCACA CTGGCTGCGC CATACGCACG CCACCCATGC GCTGGCGCGC
GGCGCGGAAC TGACCACGGT GCGAGACAAC CTGCGCCATG CGTCGGTCTC GACCACGTCA
CTGTATCTAC ATGGCGACGA TGTGAAGCGT GCCAGGCAGA TGGACGACGC GTTCCAGTGA
|
|---|
| Protein sequence | MTNRPTATHM DFPDAAALAA LRAWHAGLST RDAVSRYLDD ARATGQSSRG MVSKIRRQLA
AYARYRLRED LAQLFEFPAA ERAAKGREAD HAIETLRGLP PPAPAISDDI GLWLAPTAVE
ALRACDIHTL ADLTVRIPRR RQWWRGISGL GVAGARRIEA FFAGHPQLTA RARALIEAEP
RGVIVPWEKM GRLPHEVDGS LGQFRAPRET STLNADNDYA AVQAWLGLHE SPSTLRAYRK
EAERLILWAI IERGRPLSSL TTEDATAYRN FLRQPAPRER WVGPARPRGA TDWKPFADGL
SPRSAAYSLQ VLGALFRWLV QQRYVLANPF AGIKVRGGAK TAALDVSHAF SEGEWLLTRS
IADGLEWSYG WEASAAQRLR FILDFTYATG LRASELVGAT LRNVETDVHG DHWLRLVGKG
AKAGRVALPT MARNALDRYL VERGLPVTRA LWDPTTPIVG NLGSDEAGGI TGARLWMVIK
RFFGTAADQL EAERPATAEK LRRASPHWLR HTHATHALAR GAELTTVRDN LRHASVSTTS
LYLHGDDVKR ARQMDDAFQ
|
|---|
| |