| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3976 |
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| Symbol | |
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| ID | 4040834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 542665 |
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| End bp | 543837 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637979400 |
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| Product | branched-chain amino acid ABC transporter |
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| Protein accession | YP_586113 |
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| Protein GI | 94312904 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00878543 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0022891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAGTACA AGACATTGGG TCGTTTCTTC CCGCTGGCCG CGTGCGCGGT GGCGGCATTG
GTCGCATCGG CACCGACACT GGCGCAGGAA GTGGTCAAGA TCGGCTACAC GGGCCCGCTG
TCGGGTGGCG CGGCGCTCTA CGGCAAGAAC GTGCTGTCGG GCATCCAGAT GGCTGTCGAC
GAGATCAACG CCAGCGGCCT CGAGGTCAAG GGTAAGAAGA TCAAGCTGGA AGTCGTCTCG
CTCGACGACA AGTACGCGCC TGCCGAAGCC GCGATCAATG CGCGTCGCCT GGTGCAGCAG
TACAAGACCC CGGCGGTGTT CGTACCCCAC TCGGGCGGCA TCTTCGCGCT GCAGGCCTTC
AATGAGCAGG AAAAGTTCAT GGTGATGGCG TACTCGAGCG TGCCGCGCAT TACCGACGCC
GGCAACAAGC TGACGATCCG CATCCCACCG GCATACACCG GCTACATCGA GCCGTTCGTC
AAGGCGCAGA TGAAGCGCTT TGGCAAGAAC GTGGCGCTGG TACCTGCCGA CCATGACTAC
GCCAAGGCCT GGGTGCAAGC GTTCGTGCCC GCCTGGGAAG GCGCGGGCGG CAAGGTGGTG
GGCAACAATC CGATGTCGTA CACCAAGGCC ACCGACTTCT ACACTGGCGT TTCGCGCGCC
ATCGCCGACA AACCCGACGT GATGTTCGTC GGCGGCCCGT CGGAGCCGAC CGCGCTGGTG
GTCAAGCAGG CACGCGAGCT TGGCTTCAAG GGCGGCTTCA TCATCATGGA CCAGGCCAAG
ATGGACGAAA TGGCCAAGGT CACGAACGGT CTGGCCATGC TCGAAGGCTC GATCGGCGTG
ATGCCGCTGG TCAACGATGC ACGCCCGGTG GCACAGGCCT ATAACGCCCG CTACAAGAAG
CTGCACGACG GTCGCGATGC CACCACGGAA ATGTCGCTGA ACTACACGAT GACCTGGGCG
CTGGCCAATG CCATGAAGCT GGCCGGCACC ACCAGCGACG CAGCGGCCAT CCGCGCGAAA
ATGCCCGAGG CGGTCAAGAC GCTGCCGAAG GATGTCAATC CGAACGAGGT GGAAGGCATC
GACGCCAAGG GCGGCTCCAT GGCCGATACC GTGGTGGGCT GGGTGCAGAA CGGCAAGATC
GCGCCGGTAC GCCTGTCGGA GTTGGGCAAG TAA
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| Protein sequence | MQYKTLGRFF PLAACAVAAL VASAPTLAQE VVKIGYTGPL SGGAALYGKN VLSGIQMAVD
EINASGLEVK GKKIKLEVVS LDDKYAPAEA AINARRLVQQ YKTPAVFVPH SGGIFALQAF
NEQEKFMVMA YSSVPRITDA GNKLTIRIPP AYTGYIEPFV KAQMKRFGKN VALVPADHDY
AKAWVQAFVP AWEGAGGKVV GNNPMSYTKA TDFYTGVSRA IADKPDVMFV GGPSEPTALV
VKQARELGFK GGFIIMDQAK MDEMAKVTNG LAMLEGSIGV MPLVNDARPV AQAYNARYKK
LHDGRDATTE MSLNYTMTWA LANAMKLAGT TSDAAAIRAK MPEAVKTLPK DVNPNEVEGI
DAKGGSMADT VVGWVQNGKI APVRLSELGK
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