| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1943 |
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| Symbol | |
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| ID | 4038748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2113012 |
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| End bp | 2114583 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637977326 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_584091 |
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| Protein GI | 94310881 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.354822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGGGCG GCGGGGGCGG CGCCAAAGGC GCGGATTGTA GCACCGGGCG AAGCCGCCGG
CGCCTTCAGG CGCCCGCTGA CGCTCGCCTG CGGACCTTTC GTCGCACGAT ACTCCTGTTC
GTCATCCGCC GTTTGACGCA CTCGAGGGTG ATCAGTATAT TACTGACCGG CCAGTTATTA
ATTTCTTCCC TTGGCCCCAG GCATCCGCGC AGATGCCTGA AAGTTATCCC AAAGACGCAT
TCCAGAGAGT CGCTCGCCGT CAGGCGAGGG CCACCGGCTG CACCCGTTCC ACCGACCAGA
TATCGCTTGT CCATGCCAGT GCATTACGCC GGGCCGGAAG TTGCGGCCGT AGACGCTGAA
GTTCGTTCTC TCGCGCCGCT GCCGGAACGT CGGCGCGGAC GCCGTGCCGC CCGGCCCATC
GCCGCGGGGC TGGCCATGCT TGCGCTTTCG ACTGCCTTGA TGCTGGCTGG CTGCGGCAAG
CAGGCGGAAT CGGTCGAATA CGTGCGGCCG GTGCGGTTGC TGCAACTGAA CCCGGCAGGG
GGCAAGACGG CCTTTGAATT CTCCGGCGAG GTGCGCCCGC GCGTGGAGTC GCGCCTGGGT
TTCCGCGTGG GCGGAAAGAT CGCCGCCCGT CTGGTGGACG TGGGTGCCAC TGTGCGCAAG
GGTCAGCCGC TGGCCCGCCT TGATCCGACC GACCTGGGGC TGGCGGAAGC CGGCGCGCGT
GCCCAGTACG ACGCGGCCAA GACCGACCGC GATCTCGCGG CGTCCGATCT CAAGCGCTAC
AACGAACTCG CGGCCAAGGG ATTTATCAGT GCCGCCGAGC AGCACCGCCG CCAGGCCACC
TACGATTCGG CCGCTTCGAA GCTGGAGCAG GCCCAGGCCA ATCTGCGCAA TCAGGCGAAC
CAGACCGGCT ATGCGGTGCT GACCGCCGAC GCCGATGGCG TGGTGACCGC GATCGACACC
GAGGTGGGGC AGGTCGTTAC ACCGGGCCAG CCGGTGATCC GTGTGGCGCA GACGGCCGAG
AAGGAAGTGG CGATCGGCCT GCCGGAAGAT CAGGTCGACA TGCTGCGTGG CATTACCGAA
GTCACGATTC GCACCTGGTC GGAACCGGAT CGCGTGCTGC CGGGACGGGT TCGCGAGATT
TCCGCAGCTG CCGATACGGT GACGCGGACG TACCCGACGC GTGTCAGCGT GCCCAATCCG
CCGGCTGACC TGCGCATCGG CATGACCGCC GTGGTGACCT TTGTCCGATC TGGCGACAGT
GCCGCGATTC GCATTCCGCT GACGGCCCTG CTGCAGAACA ACGGCAGCAA TCAGGTCTGG
GTCTATCAAC CGGATTCCGG CGGCAAGGGC ACGGGTGGCA CGGTCAACCC GGTGCCGGTG
ATGCTCGGCA ACGCCGACGG CAACCTGATA GAAGTGCGAA GCGGTCTGAA GCCGGGTCAG
GTCATCGTCA CGGCGGGTGT GCACCTGCTC AGGCCGGGGC AGAAGGTCAG GCCGATGCAG
AGCATCGCTC CGGCGCAGCC GGCCTCGAAT CCTGGCGCGC CGCTGGCCGC GCTGGATAGG
CGCCTGGGCT GA
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| Protein sequence | MWGGGGGAKG ADCSTGRSRR RLQAPADARL RTFRRTILLF VIRRLTHSRV ISILLTGQLL
ISSLGPRHPR RCLKVIPKTH SRESLAVRRG PPAAPVPPTR YRLSMPVHYA GPEVAAVDAE
VRSLAPLPER RRGRRAARPI AAGLAMLALS TALMLAGCGK QAESVEYVRP VRLLQLNPAG
GKTAFEFSGE VRPRVESRLG FRVGGKIAAR LVDVGATVRK GQPLARLDPT DLGLAEAGAR
AQYDAAKTDR DLAASDLKRY NELAAKGFIS AAEQHRRQAT YDSAASKLEQ AQANLRNQAN
QTGYAVLTAD ADGVVTAIDT EVGQVVTPGQ PVIRVAQTAE KEVAIGLPED QVDMLRGITE
VTIRTWSEPD RVLPGRVREI SAAADTVTRT YPTRVSVPNP PADLRIGMTA VVTFVRSGDS
AAIRIPLTAL LQNNGSNQVW VYQPDSGGKG TGGTVNPVPV MLGNADGNLI EVRSGLKPGQ
VIVTAGVHLL RPGQKVRPMQ SIAPAQPASN PGAPLAALDR RLG
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