| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1856 |
|---|
| Symbol | |
|---|
| ID | 4038658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 2011950 |
|---|
| End bp | 2013431 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637977236 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_584004 |
|---|
| Protein GI | 94310794 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0833] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.368764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCATC CACACCCCCA TCAACACCCG GTCGTCGAGC ACGACGACCT GCACCGCAAG
CTCAAGGCCC GCCACCTGAC GATGATCGCC CTGGGTGGTG CCATCGGCAC CGGACTGTTT
GTCGCCTCGG GCGCATCCAT CGCACAGTCC GGCCCCGGCG GCGCCCTGCT GGCCTACTGC
CTGATCGGCC TGATGGTGTA CTGCCTGATG ACCAGCCTTG GCGAGCTCGC GGTGCACATG
CCCGTGGCAG GATCATTCGT AACCTACAGC GCCCTCTACG TCGACGAGGG CTTTGGCTTC
GCACTTGGCT GGAACTACTG GTTCAGCCTG GCCGTGACAA TTGCCGTCGA ACTGACCGCA
GCCCAGTTGG TCATGCAGTA TTGGTTCCCG GAGGTACCGG GCATCTACTG GAGCGCGGGC
TTTCTGGCAC TGATGTTCGC GCTCAATGCG TTCTCGGTGA AGGGCTTCGG CGAGGCCGAG
TACTGGTTCG CCATGATCAA GGTTGTAACC GTCGTCGTTT TCCTGTGCGT GGGCGTGCTG
ATGATCCTCG GCATCCTCAA GGGTGGGCCA CAATCGGGCT GGCACAACTT CACGACCGGC
GAAGCCCCAT TCGTCGGTGG CCTCCCCGGG CTGTTCGCGG TGGCGATGAT TGCCGGCTTC
TCATTTCAAG GAACCGAGAC GGTCGGCGTG GCGGCTGGTG AAGCCGCGGA CCCCGGACGC
ACGATTCCGC GCGCGATCCG ACAGACGTTC TGGCGCATCC TGCTGTTCTA TGTCGTTGCC
ATCCTGATCA TTGGCGTGCT CATTCCGTAT ACCGACCCGA ACCTGCTTCG CAATGACGTG
ACCGACGTTG GCGTCAGCCC GTTTGCACTG GTATTCCAGC ACGCTGGCCT GGCTTTTGCC
GCGGCGCTGA TGAACGCCGT GGTGCTGACC GCGCTGCTCT CGGCGGGGAC ATCGAGCATG
TATGTTTCGA CTCGGATTCT CTATGGCTTG GCGGTCAGCC AGCGCGCCCC AAGGGCTCTA
GCCAAGCTCA CCCCGAACGG CGTGCCATTC AACGCGCTGC TGGTGACCAC GGGCATCGGC
GCGCTGTGCT TCTTCAGTTC GCTGTTCGGC GACAAGGCCG TGTACCTGTG GCTGCTCAAC
ACATCGGCAA TGACCGGCTT CTTCGCGTGG CTCGGTATCG CCGTCAGCCA CTATCGTTTC
CGCAAGGGTC TGCTGTACCA GGGCTACAAG GTCAGCGATC TTGCCTACCG CTCTCCGCTC
TATCCGTTCG GCCCGATCTT CGCTGGCGTG CTGTGTCTCG TCATCGTGGG CGGCCAGAAC
TATCAGGCAT TCACTGACAT CCCCGGCCGT TGGCAAGAGA TCGTCTCGAC CTACATTGGC
GTGCCAGTCT TCCTGGCGCT ATGGCTCGGC TACCGCATCG TACGCGGCAC GCGCATGATC
GACTACGAAG ACATGCCGTT TGAACTGGTA AAGAAGGACT GA
|
|---|
| Protein sequence | MSHPHPHQHP VVEHDDLHRK LKARHLTMIA LGGAIGTGLF VASGASIAQS GPGGALLAYC
LIGLMVYCLM TSLGELAVHM PVAGSFVTYS ALYVDEGFGF ALGWNYWFSL AVTIAVELTA
AQLVMQYWFP EVPGIYWSAG FLALMFALNA FSVKGFGEAE YWFAMIKVVT VVVFLCVGVL
MILGILKGGP QSGWHNFTTG EAPFVGGLPG LFAVAMIAGF SFQGTETVGV AAGEAADPGR
TIPRAIRQTF WRILLFYVVA ILIIGVLIPY TDPNLLRNDV TDVGVSPFAL VFQHAGLAFA
AALMNAVVLT ALLSAGTSSM YVSTRILYGL AVSQRAPRAL AKLTPNGVPF NALLVTTGIG
ALCFFSSLFG DKAVYLWLLN TSAMTGFFAW LGIAVSHYRF RKGLLYQGYK VSDLAYRSPL
YPFGPIFAGV LCLVIVGGQN YQAFTDIPGR WQEIVSTYIG VPVFLALWLG YRIVRGTRMI
DYEDMPFELV KKD
|
|---|
| |