Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1796 |
Symbol | |
ID | 4038598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1948343 |
End bp | 1950220 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637977176 |
Product | fusaric acid resistance protein region |
Protein accession | YP_583944 |
Protein GI | 94310734 |
COG category | [S] Function unknown |
COG ID | [COG1289] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00451003 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAGCT GGCCGAATGC CCGACAGTGG CTGTTTTCGC TGAAGGCATT CGCTGCCGCG ATGCTGGCGC TCTACATCGC ACTGTATTTC GGCCTGCCGC GCCCCTACTG GGCCATGGCC ACGGTCTATT TTGTCTCCCA TCCGCTGACG GGCGCGACGC GCTCGAAGGC CGCCTATCGC GTGGCCGGTA CCGTGCTCGG CGCCACCGCG GCAGTGGCGA CGGTGCCGCA ACTGGTCAAT ATGCCGATCG TGCTGATGGG CGCGATCTCC CTCTGGATCA TGGTGCTGGT CTACCTGTCG CTGCTGCAAC GGTCACCGCG CAGCTACGTG TTCCTGCTGG CCGCCTACAC GCTGCCGATC GTCGCGCTGC CGGCGGTGAT GCACCCGGGC GACATCTTCG ACATCGCGGT GGCCCGGATC GAGGAGATCG TGATCGGGAT CGTCTGCGCG GGGCTGGTCG GATCGATCGT CTTTCCCGCG AAAGTGGCGC CAGCGCTGCG AGACCGCATC CGCATCTGGC TGCACGACGC GGCCGCATGG GCCAACGATA TCGTCAATGC CAGCCCCCGT GCCGATGCCA GCCGTCACCG TCTAGCCGCC GATATGCTGG CGCTCGACCA GTTGATCGCG CAGCTTTCGT TCGATACCGA CAGCCAGCAG ACGCTGCACC ACGCCCGCGC GCTGCGTGCG CGGATGTCGG GGTTGATGCC GATCCTGTCG GCGCTGGAAA GCGTGCTGCA TGCACTGCGC ACGACGCCCG AAGGCAGCGA GCGCGAAGCC CTGACCCGTA CCGCCACCCA TCTGCAGGCG CAGTTCAACC GGCTGATGCG GACCTGCGAG AGGCTGCAGC ACGGCATCAG CGACCACCCG CCCGACCTGC CCCCCGAGGA ACCGGCAGGC GCCGAGCAGG CCGCGGACGA GGCGGCCGCG TATCACGACC ACGCCATGTT GCTGTTCGGC GCGGTGTCGG CCGGACTGGC GGTGTTCTGC GTCGGGCTGC TCTGGATCTT CTCGGGCTGG GAGGATGGCG GCGGCCCCGT GGCCGTGGCG TCGATCGCAA GCTGCTTTTT CGCGACCATC GACGAGCCCC GTCCGGTGGC GCGCATGTTC CTGCGCTGGA GCGCCGCGTG CCTGCTGATT GCATCGTTCT ACCTGTTCAT GGTGATTCCG CACGCGCAGA CGTTCGAGAC CCTGGTGGGG ATGTTGTCCG TGCCCTACCT TGGCATTGGC ATGTTGATCC AGCGGCCAGG ATTCAATCTG ATCGCGATGC TGCTATCGGT GAATACGGCG TCGTTCGCCA ACGTGCAGAG CGTCTACGAC ACAAACTTCC TCGGCATCTT CAATACGAGC CTGGCCAATG CGGCGGCCAT GCTGTTCGCA CCGGTCTGGG CGATGCTGGC GCGGCCTTTC GGCGCCCATG TGGCCGCGCA CCGCCTGCTG CGCGCGAGCT GGCAGGACCT GGCGCACGCC GCCACGTGGC GCGCTGCGGA CATCCATACG CAGCTTGGCG CCCGGATGCT CGACCGGCTG GGCCAGTTGA TGCCACGCCT GGGCGCCAGC CGGGGGCGGC TGGCATCCGA TGGGTTTACG GAGTTGCAGA TCGGCTACTG CACGCTGGCG CTGCAGCGCG CGCTGCCGTC ATTGCCGCCA GCTGCGCGCA AACCCATCAG GCGGGTGTTG AGCATCGTGG CACGCCACTT CCGGGCGCGC GCGCGCGCCG GGCATGTGGT ACCCGTGCCG ATGCCACTGC GGCAGTGGCT CGATACCTCG ATCGGACAGG TCATGGCGGC GCGTGGCGAT AACCAGCAGA TGGCGGCTGT ACTGAGCGCG CTCGTGGTGC TTCGCCTCAC GATGCAAACG CATGAAAAAA ACGACTGA
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Protein sequence | MASWPNARQW LFSLKAFAAA MLALYIALYF GLPRPYWAMA TVYFVSHPLT GATRSKAAYR VAGTVLGATA AVATVPQLVN MPIVLMGAIS LWIMVLVYLS LLQRSPRSYV FLLAAYTLPI VALPAVMHPG DIFDIAVARI EEIVIGIVCA GLVGSIVFPA KVAPALRDRI RIWLHDAAAW ANDIVNASPR ADASRHRLAA DMLALDQLIA QLSFDTDSQQ TLHHARALRA RMSGLMPILS ALESVLHALR TTPEGSEREA LTRTATHLQA QFNRLMRTCE RLQHGISDHP PDLPPEEPAG AEQAADEAAA YHDHAMLLFG AVSAGLAVFC VGLLWIFSGW EDGGGPVAVA SIASCFFATI DEPRPVARMF LRWSAACLLI ASFYLFMVIP HAQTFETLVG MLSVPYLGIG MLIQRPGFNL IAMLLSVNTA SFANVQSVYD TNFLGIFNTS LANAAAMLFA PVWAMLARPF GAHVAAHRLL RASWQDLAHA ATWRAADIHT QLGARMLDRL GQLMPRLGAS RGRLASDGFT ELQIGYCTLA LQRALPSLPP AARKPIRRVL SIVARHFRAR ARAGHVVPVP MPLRQWLDTS IGQVMAARGD NQQMAAVLSA LVVLRLTMQT HEKND
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