Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1488 |
Symbol | |
ID | 4038291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1607397 |
End bp | 1607984 |
Gene Length | 588 bp |
Protein Length | 195 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637976872 |
Product | TraF peptidase |
Protein accession | YP_583640 |
Protein GI | 94310430 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4959] Type IV secretory pathway, protease TraF |
TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.147987 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCG TTTCCCCTGC CGACACCGCG CCGCGTCCTC GCTCGCGCCT ACACGCTCGC ATCGTGCTGG CGGGCCTGTC CGCCTGCGGC CTCGCTGCGC TGGCCTGGGC GTCCTTCGTG CATCCACTGC CGCGCCTAAC CTACAACCCG TCCGACAGCG TGGCGGTAGG CTGGTATCGC GTCGATCCAC TCGACCACCG CGCCAGCTCG CCGCCTCGTC CGTTGTCCGT GGGCAGCATC GTGCTGGTTC CACTGCCTGC CGAAGCCGCA GCACTCGCTG CGCAGCGCGG CTACCTGCCG ACGCGCATCC CGCTGCTCAA GCGCGTCGGC GCGGTCGCGC CGCAGGAGGT GTGCATCGCT GACGGCAGCG TCCGCATCGA CGGCGTGCCT TCGGCCGCCG TGTTGCCTGC TGACCGGCTG GGACGGCCGC TGCCATCCTG GCAGCAGTGC CGCCGCCTTC GGTCTGGCGA GCTGTTCCTG CTCAGTGTCA TCAATCCGGC GTCGTTCGAC AGCCGGTATT TTGGGCCGGT CAGCGCCGCC ACCGTGATCG GCGTTGCACG TCCGATCTGG CTGGAGTCAC GCCCATGA
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Protein sequence | MTAVSPADTA PRPRSRLHAR IVLAGLSACG LAALAWASFV HPLPRLTYNP SDSVAVGWYR VDPLDHRASS PPRPLSVGSI VLVPLPAEAA ALAAQRGYLP TRIPLLKRVG AVAPQEVCIA DGSVRIDGVP SAAVLPADRL GRPLPSWQQC RRLRSGELFL LSVINPASFD SRYFGPVSAA TVIGVARPIW LESRP
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