| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1432 |
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| Symbol | |
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| ID | 4038235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1550581 |
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| End bp | 1552413 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637976816 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_583584 |
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| Protein GI | 94310374 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000648222 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGATA GCAATACGCC CGGCCGCAAG ACGCTGGGCA TCAAGACCAC CTCCTCCAGC
ACAACGCGCA AGGCGAGCCG CCCGGTGCGC GTGTCTGACC TGAACCGCAA GCGTGTCCAG
GAAGTGGTCA CGGGGATCAA GCAGGCCAAG GACCGCGCCT CCGACAAGGA CAAGCGCAAG
GCTGGGCCGG CCGATGGCGC GCCGCGCAAT GAGCGTCAGG ACCGACCGGC GCGACCGGCA
CGTCCGCGCC CCGCCGAAGG CGAGCGGGCA CCTCGCCGTT TTGCCGAAGG AGAGCGGGCA
CCACGCCGGT TCAGCGATGA GGAGCGCCCG CAGCGCGAGC GCCGGTACGG CGATGACAAC
CGCCCCGCGC AACCGCGCCG CTATGGCGAT GACAATCGAG CCGAGCGTCC GCGTCGGTTC
AGCGACGAAG ATCGTGCCGC ACGCCCCCGC CGCTTTGGCG ACGAGGAACG TCCGCAGCGT
GAACGCCGCT ATGGGGATGA CAACCGCCCC GCGCAACCGC GTCGCTATGG CGATGACAAT
CGCGCCGAGC GTCCGCGTCG ATTCAGCGAC GAGAATCGCG CCGCTTCGCC CCGCCGCTTT
GGCGACGAGG AACGTCCGCA ACGCGAGCGG CGCTACGGAG ATGACAACCG CCCCGCGCAA
CCGCGTCGCT ATGGCGATGA CAATCGCGCC GAGCGTCCGC GTCGATTCAG CGACGAGAAT
CGCGCCGCCC CGCCCCGCCG CTTTGGCGAC GAGGAACGCC CGCAGCGTGA ACGCCGCGCT
GGAGACGACA ACCGCTCCGC GCAACCGCGC CGCTATGGCG ACGACAATCG CGCCGAACGT
CCCCGCCGCT ACGGCGATGA CGAGCGCACG CAGCGTACCG AGCGCCCGCA CCGCAGCGAC
GAAGCTCGCG CGCCGCGCCG GCAGCACCAG GACGACAACG CACCGCGTCG TGGTGACGCC
CCGGCACGCC GCTTCAGCGA TTCGGCCGAC CGCGCCCGTG GTGAACGTAC CGAACGCCCG
GTGCCGCGCG CCGAAGCGCG TCAGCCGGTC TCCGAGCATG AAGACGGCCT CGTCCGTCTC
TCCAAGCGCA TGTCCGAACT GGGCCTGTGC TCGCGCCGCG AGGCCGATGA ATGGATTCCG
CGCGGCTGGG TGCTCGTCGA CGGTAAGCCA GTGACCGAAC TCGGCACGCG CATTCGTCCC
GAAGCGGAGA TCGAAATCCT GCAGGCCGCG CGCTCGGAAC AAGGCGAACG CGTGACGGTG
CTGCTTAACA AGCCGGTCGG CTATGTCTCC GGCCAGGCCG AAGACGGCTA TGAGCCGGCT
GCTGTGCTGT TTGCGCCTGA GAACCAGTGG GAACTGGACC CCACCCGCAA GCGCTTCGCC
CCGTGGCAAC GCAAGAATCT CGCGCCGGCT GGCCGGCTCG ACATCGACTC GACCGGGCTG
CTCGTGCTGA CCCAGGATGG CCGCGTTGCA CGCGCACTGA TCGGCGACGA TTCGAATGTC
GAGAAGGAAT ATCTGGTGCG CGTCGAGTGG GAATCGCCGC AGGGTCTGGT CGAGCGCAAT
ATCAGTGCCG TGTTCCCCGA CGACCTGCTG GAGCGTCTGC GCCACGGTCT GTCGCTGGAC
GGCGTGGCGC TCAAGCCGGC CAAGGTCAGC TGGCAGAACG AGGAGCAACT GCGCTTCGTG
CTGCGTGAAG GCCGCAAGCG TCAGATTCGC CGGATGTGCG AGCAGGTTGG CCTGAAGGTG
GTTGGCCTCA AGCGCGTGCG CATGGGCCGT GTGGTGCTCG GCGACCTGCC GCCGGGCCAG
TGGCGCTTCC TGGGGGCCTT CGAGAAGTTC TGA
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| Protein sequence | MTDSNTPGRK TLGIKTTSSS TTRKASRPVR VSDLNRKRVQ EVVTGIKQAK DRASDKDKRK
AGPADGAPRN ERQDRPARPA RPRPAEGERA PRRFAEGERA PRRFSDEERP QRERRYGDDN
RPAQPRRYGD DNRAERPRRF SDEDRAARPR RFGDEERPQR ERRYGDDNRP AQPRRYGDDN
RAERPRRFSD ENRAASPRRF GDEERPQRER RYGDDNRPAQ PRRYGDDNRA ERPRRFSDEN
RAAPPRRFGD EERPQRERRA GDDNRSAQPR RYGDDNRAER PRRYGDDERT QRTERPHRSD
EARAPRRQHQ DDNAPRRGDA PARRFSDSAD RARGERTERP VPRAEARQPV SEHEDGLVRL
SKRMSELGLC SRREADEWIP RGWVLVDGKP VTELGTRIRP EAEIEILQAA RSEQGERVTV
LLNKPVGYVS GQAEDGYEPA AVLFAPENQW ELDPTRKRFA PWQRKNLAPA GRLDIDSTGL
LVLTQDGRVA RALIGDDSNV EKEYLVRVEW ESPQGLVERN ISAVFPDDLL ERLRHGLSLD
GVALKPAKVS WQNEEQLRFV LREGRKRQIR RMCEQVGLKV VGLKRVRMGR VVLGDLPPGQ
WRFLGAFEKF
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