| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1258 |
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| Symbol | |
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| ID | 4038061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1378405 |
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| End bp | 1378992 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637976644 |
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| Product | TraF peptidase |
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| Protein accession | YP_583412 |
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| Protein GI | 94310202 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0804995 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGCCG TTTCGACTGC CAGCACCGCG CCGCGTCCTC GCTCGCGCTT GCGCGCTCGC
CTCGTGCTGG CGGGCCTGTC CGCCTGCGGC CTCGCTGCGC TGGCCTGGGC GTCCTTCGTG
CATCCGCTGC CGCGCCTGAT CTACAACCCA TCCGACAGCG TGGCGGTCGG CTGGTATCGC
GTCGATCCGC TGCACCACGG CACCGCCTCG CTGCCACGTC CTTTGTCCGT GGGCAGCATC
GTCCTGACCA CGCTGCCGCC AGACGCCGCC GTGCTGGCCG CGCAGCGCGG CTACCTGCCG
ACGCGCGTGC CGCTGCTCAA GCGCGTGGGC GCCGTCGCGC CGCAGGAGGT GTGCATCACT
GGCCGCGTTG TCCGCATTGA CGGCGTGCTT TCGGCCGCCG TGCTGCCTGC TGACCGCTGG
GGCCGGCCGC TGCCATCCTG GCAGCAATGC CGTCGCCTCG AACCCGGCGA ACTGTTCCTC
TTGAGTGTGA CCAACCAGGC GTCGTTCGAC AGCCGGTATT TCGGGCCGGT CAGCACATCC
GCCGTGATCG GCGTCGCGCA TCCGGTCTGG CTGGAGTCAC GCCCATGA
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| Protein sequence | MTAVSTASTA PRPRSRLRAR LVLAGLSACG LAALAWASFV HPLPRLIYNP SDSVAVGWYR
VDPLHHGTAS LPRPLSVGSI VLTTLPPDAA VLAAQRGYLP TRVPLLKRVG AVAPQEVCIT
GRVVRIDGVL SAAVLPADRW GRPLPSWQQC RRLEPGELFL LSVTNQASFD SRYFGPVSTS
AVIGVAHPVW LESRP
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