| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1240 |
|---|
| Symbol | |
|---|
| ID | 4038043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1363839 |
|---|
| End bp | 1364831 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637976627 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_583395 |
|---|
| Protein GI | 94310185 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.173806 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCC ACTGGAATGG TTATCACAGC GCGCTGGCCA CACATATCGA ACAATACCTT
CGGGCCAAGC GCGCCATGGG TTGCAAGTTC GCATGCGAAG GCCGCCAACT GAGACTCCTT
GATCGGTTCC TCGCTGAGCG CGGCATTGAC AAGATAGACG TCATCGACGG CGCATGCTTG
CAGGCGTTTC TGGACTCGCG TCACCGAACC AATCCTCGTA GTTATAACAA TCTGCTCGGA
GATGTCCGGA GATTGTTTGA CTGGATCGTC GGTCAGCAGA TGCTGCCCGC ATCGCCATTG
GTTGCAAAGG CCAAGCCGCA GAGAGCCCGG CGGATTCCCT TCCTGTTCTC ACCCGAAGTG
ATCAGGCGAC TGCTGGCCCT GGCCAGGGCT TTGCCGGATA ACTCCCGTGC ACCACAGCGC
GGCATCACCT ACGAGATGAT TTTTGCACTG CTCGCCAGCC TTGGGCTACG AGTGGGCGAG
GTGGCCGGTT TGCAGTGGGG CGACGTGGAC CTGGAGCGCG AGGTCCTGGA GATATCCAAC
ACCAAGTTCG GCAAGGACCG GCTGGTGCCC TTTGGCCCCA AGCTAGCAGC CAGGCTACGC
GAGTATCGGC TTGAACGCGA GCGGCAGGGC CGTATCTGCA CAGGCGCCCA CCATCTGTTT
TCATGGAACG GCCGCACACC GATCAGCACC AATAGCATCC GCAACACCTT CAGGGACGAT
CTGCTGCCAC AGCTACACCT CACGGTGCCG CCTGGCTGCT TTGGCCCGCA CGTCCATGGT
TTGCGGCATT CTTTCGCGGT GCGAACGTTG CTGGGCTGGT ACCGCCAAGG AATCATTCCC
AGTGACCGCT TGCATCACCT GTCCACGTTC CTGGGACACG TCAATCCCAA GAGCACGGCG
GTGTATCTGA CGATCACCAA CGAGCTGCTC GATGCCGCCA ATGAGCGTTT CGAGTCATTT
GCACCATTGT TGGCTGCGGG AGGTTCATCA TGA
|
|---|
| Protein sequence | MTAHWNGYHS ALATHIEQYL RAKRAMGCKF ACEGRQLRLL DRFLAERGID KIDVIDGACL
QAFLDSRHRT NPRSYNNLLG DVRRLFDWIV GQQMLPASPL VAKAKPQRAR RIPFLFSPEV
IRRLLALARA LPDNSRAPQR GITYEMIFAL LASLGLRVGE VAGLQWGDVD LEREVLEISN
TKFGKDRLVP FGPKLAARLR EYRLERERQG RICTGAHHLF SWNGRTPIST NSIRNTFRDD
LLPQLHLTVP PGCFGPHVHG LRHSFAVRTL LGWYRQGIIP SDRLHHLSTF LGHVNPKSTA
VYLTITNELL DAANERFESF APLLAAGGSS
|
|---|
| |