Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1116 |
Symbol | |
ID | 4037914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 1217577 |
End bp | 1218644 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637976498 |
Product | ornithine cyclodeaminase |
Protein accession | YP_583271 |
Protein GI | 94310061 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00262553 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAACT CGCCCACGCT CACAGCCACC ACCTTGCCCT CTGCATCGAA CCCCTCCCAC ACCAAGCCCG AACTACGCTA CCTGAGCCGC GACGACCTGA TCGCGCTGGG CGCGGGCCAC TCCGATGCCT TCGTGCAAGC CATTACCGAA GGGCTCGCCA TCCACGCGCG CGGCGAGCAT GTGCAGCCAC TCAAGCCCTA TCTGCGCTGG TCCGGCGCCG ACCATATCGC CGACCGCATC ATCGCGATGC CCTGCTACAT CGGCGGCGAC AACCCAATCG CCGGCATCAA GTGGATCGGC AGCCGCCAGC ACAACCCCGC GCGATTCGGC CTGGAGCGCG CCAGCGCGGT GATCGTGCTC AACGACGCCA CCACCAACTA CCCGGTGGCG ATCATGGAAG GCGGCCTGAT CAGCGGCATG CGCACCGCCG CCATCACGGC AGTGGCCACG CGGCATCTGG CGCGTAGCGG CTTCACCGAT GTCGCCTGCA TCGGCTGCGG CCCGATCGCA CAGATGCAGA TGCAGACGCT CCTCGAGCAA TTCCCGCAGA TCCGCGCCGT GCACCTGTTC GATCTCTCGC GCGACGCCAT GCATGCGATG CGGTCGATGC TCGGCAGCCG CTTTCCCGCC GTGGGCTGGG AACTGTGCGG CAGCGCCGAA CTGGCCGTAC GCGCCGCCGA CGTGGTGGTG ACCTGCACGG TCACCGATAC GCCGTACCTC GAACACGCCT GGCTCAAGAC CGGCGCCTTC GTCTGCAACG TGTCGATCAT GGACGTGCAC AAGGATGTTT ACGAGAAGGT CGACAAGGTG ATCGTCGACG ACTGGGACCA GTCCAACCGC GAAAAGAAAA TCATCAACCA GCTTGTGCTC GAAGGCCGCT TCAGCCGCGA GCAATTGCAC GCGGAACTGG GCGAGATCGT GATCGGCAGG AAGCCCGGCC GCGAGCGCGA CGACGAGATC ATCCTGCTCA ATCCGATGGG CATGGCGCTC GACGACATGG TCTGCGCACG CCACTTCTAC CACCTGGCGC TGGAACGCAA CGCCGGCACG CGCCTGCCGC TGCTATGA
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Protein sequence | MTNSPTLTAT TLPSASNPSH TKPELRYLSR DDLIALGAGH SDAFVQAITE GLAIHARGEH VQPLKPYLRW SGADHIADRI IAMPCYIGGD NPIAGIKWIG SRQHNPARFG LERASAVIVL NDATTNYPVA IMEGGLISGM RTAAITAVAT RHLARSGFTD VACIGCGPIA QMQMQTLLEQ FPQIRAVHLF DLSRDAMHAM RSMLGSRFPA VGWELCGSAE LAVRAADVVV TCTVTDTPYL EHAWLKTGAF VCNVSIMDVH KDVYEKVDKV IVDDWDQSNR EKKIINQLVL EGRFSREQLH AELGEIVIGR KPGRERDDEI ILLNPMGMAL DDMVCARHFY HLALERNAGT RLPLL
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