| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0647 |
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| Symbol | |
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| ID | 4037436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 713059 |
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| End bp | 714921 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637976022 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_582802 |
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| Protein GI | 94309592 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.377481 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.471986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGA AGACAACTGA AGCAGCACGC GGCACACGCC ACTTCGTCCT GGCCGCCATC
CTCTGCACAC CGCTCGCCGC CGCGGCACAG GTCGCGGTAG AAGCCGGCAA CGTCGCCAGG
TCGACCACGC CGGCGGCGGC CTCGCCAGCG GTCAAGGTCC CGGGAGGACC CGTGCAGATG
ACCATCAGCA TGGCGCCCGT GCCCGCCGCC CCCTCGATCG CCGCTGACGC CCGGGGCCCG
AACTGCTCCG GCGCGATCCG CAACGAATCG AGCGTGATCG TGCCGATCGG CAAGTCGCAG
CTGATTCCGC TGCCCGAGCC AGTACGCAAC CGCACGCTGG GCAACCCGAA CGTCGTGCAG
GCCACGATGG TGTCGCCGCA GACGCTCTAT GTCCTCGGCC GCAGCGTGGG CACCACCAAC
ATGATCGTGC AGGGCCGCAG TGGCGGTTGC AGCATCATCA ACGTGGTGGT CAACGCGGAC
TCGAACGGAC TGCAGACCTC GCTGGCCCAG TTGCTGCCGG GTGAATCGGG CATCCGCGTG
ATGACCGCCG CGGACAATCT GGTACTGACC GGCAGCGTCT CCAGTTCACA GGCTGCACTG
CAGGCCATGG ATATCGCCCA GGCGTACGCC AACGCGGCAC AGGGCGACGG CGCCAACGGC
AAGAAGGGCG GCGTGCTCAA CATGATGTCC GTCGACACCC CGCAGCAGGT GATGTTGGAG
GTGAAGGTTG CCGAAGTCTC CAAGACGCTG CTCAACCAGC TCGGTTCGGC AGTCAATATC
CAGGGCGGCT TCGGATCGTG GACCGGTGGC GTGATCTCGA ACCTGCTCAC GGGTGCGGCG
GCCGGCATCT TCGGTAGCAA GGCCAACAAC AAGCCGTTCA ATCTCGCGAT CGACGCGCAG
AAGAACGACA GCCTGGTAAA GGTTCTTGCC GAACCGAATC TGGTCACCAT CAGCGGTCAA
GAAGCCAGCT TCCTCGCAGG CGGCAAGATC TACATCCCGG TCGCGCAGAG CAACGCGCTC
GGTGGCGCCT CCACCATCAC GCTGCAGGAA GAAGAGTTCG GCGTGGGGCT GAAGTTCACC
CCGACCGTGC TGGCCAATGG ACGGATCCAC CTGAAGGTGT CGCCGGAAGT CTCGGAACTG
TCGCCAACTG GGGCAACGGT CAGCGGCAGC ACGCTGACCG GACAGACGAT CCTGCCGCTC
ATCACGACTC GCCGCGCCTC CACCACCGTG CAGATGCGCG ATGGCGAGAG CTTCGCGATC
GGTGGCCTGC TGCAGGACAG CGCACGTGGC TCGCTGAAGG CACTGCCTGG CGCTGGTGAG
GTTCCGGTGC TTGGCACGCT GTTCCGCAGC ACGCAGTTCC AGCAAGACCT GACCGAGCTG
GTGTTCATCA TCACGCCGCA CCTGGTCAAG CCAATGCAGA CGCAGAACTA TCCGCTGCCG
ACCGACGGCT TCACTACGCC TGACCCGCTG TCGCTCTACT TCATGGGCAA CATGGAAGGC
AAGGGCAGGC CTGCTCCGCA GCCGGCACCG GCGCCTTCGC AACCCGCCGC GCCCGCCACG
GCACCTGCTC CCGTGCCTTC GACCCCGCGC AGCGAAGCCG GCCCGACCAC GTCGGTTCCC
ACCAGCCCCA CTCCGATCGG CAAGCTCCTG GACGAGCCGG CGCCGTCGGC CCCCGCGGCT
TCGCCAGCAC CAGTGGCAAC CGTGGGGCCA CGGCCGCCCC AGGGGCCCGC ACGTGACCTC
GTAGCCGCCA CTCCGCCCGA GGACAACAGC GCGCGTGTCG CGCGCATCGA GGCCACTGCG
CTCCGCCTGG CCCAGGCAAG GGCCGCGGCC GCGACCACCC CCGGCACCAC GGGCAGCAAC
TGA
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| Protein sequence | MNQKTTEAAR GTRHFVLAAI LCTPLAAAAQ VAVEAGNVAR STTPAAASPA VKVPGGPVQM
TISMAPVPAA PSIAADARGP NCSGAIRNES SVIVPIGKSQ LIPLPEPVRN RTLGNPNVVQ
ATMVSPQTLY VLGRSVGTTN MIVQGRSGGC SIINVVVNAD SNGLQTSLAQ LLPGESGIRV
MTAADNLVLT GSVSSSQAAL QAMDIAQAYA NAAQGDGANG KKGGVLNMMS VDTPQQVMLE
VKVAEVSKTL LNQLGSAVNI QGGFGSWTGG VISNLLTGAA AGIFGSKANN KPFNLAIDAQ
KNDSLVKVLA EPNLVTISGQ EASFLAGGKI YIPVAQSNAL GGASTITLQE EEFGVGLKFT
PTVLANGRIH LKVSPEVSEL SPTGATVSGS TLTGQTILPL ITTRRASTTV QMRDGESFAI
GGLLQDSARG SLKALPGAGE VPVLGTLFRS TQFQQDLTEL VFIITPHLVK PMQTQNYPLP
TDGFTTPDPL SLYFMGNMEG KGRPAPQPAP APSQPAAPAT APAPVPSTPR SEAGPTTSVP
TSPTPIGKLL DEPAPSAPAA SPAPVATVGP RPPQGPARDL VAATPPEDNS ARVARIEATA
LRLAQARAAA ATTPGTTGSN
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