| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_1601 |
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| Symbol | |
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| ID | 8568253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodothermus marinus DSM 4252 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013501 |
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| Strand | - |
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| Start bp | 1855096 |
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| End bp | 1856823 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | |
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| Product | Squalene/phytoene synthase |
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| Protein accession | YP_003290875 |
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| Protein GI | 268317156 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0484297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCT TCGATCGGCT GCTGCTTTAC GGGTTATATG GTTTCACGAT CATTGCCGTC
GCCGGCTTTG GGATTTTCGG ACGCCACCCG GAATTGCTTG TCCGCTGGCC GGAGCTTGCT
GCGTTCTACG CCCGGTCTTT TGCGCTTTTT GCGCGGGTGC ATGTGCTGCT GACGGCTTTT
GTCCTGTTCG CGTACATGGG GCGTCGTGTC GGTGGGCGCT GGGTGCCGGC CGGACTGCTC
GTCTACGGCG TGAGCCTACT CAGCGAGACG CTGGGGACCA CGTATGGCGT GCCTTTCGGG
ACCTATGGTT ACACCACCCT GCTCGGAGGA AAGTGGTTCG GCCGCGTGCC CTATCTGATT
CCGCTCAGCT GGTTTGTGAT GGCGGTGCCC TGTTATGTGC TGGCCCGCGC CGCCTTTTCG
GAGCGTCGGC AGTGGCCGGC TCGGCTGCTG CTGGCAACCT ATCTGCTGGT GGCCTGGGAT
CTGAGTCTGG ATCCGGCCAT GAGCTACCTG ACGTCGTACT GGACCTGGGG GGAGACCGGC
CCTTACTACG GGATGCCGCT GATCAATCTG GCCGGATGGG CGCTGACCGG TCTGGTGATT
ATGGGCGTAC TGGAGGCGAT GCGCGCGTTT CGCTGGACCG AAGCGTTCAG CGTGCAGTGG
ATGGCGGTGT TCTATGGAGC GGTGTTGCTG ATGCCGCTCG GTATGGTGGC TGTGGCCGGT
CTCTGGGGGG CTGTCGCTGC TACGGTCGCC GCACTGGGCC TGGCGGGAAG TGTCGTCTGG
CTGATCCGGC GCAGGCGGCC GCGCATGGAT ACAAAGGGCG CGCTTCCCGC GCGGGATGCC
TTCGAGGAAG ATGGCACGCG CTTTTTCGCA GCACATGCCC GTTCGTTTTC TTTTGCCGCG
CGGCTGTTTC CGAAGGACTT TCGCCGGGAA GTTGTCCTGC TCTATGGTTT CTGTCGGCTT
ACGGACGATC TGGTAGACGG CGCATCGACG CAGGTTGCGC CCGAGTTGCT GCAGAAGCGT
CTGGATCGGT GGCAACGCCA GGTACGGATG GCCTACGAGG GGCGTCCTTC CGGACTCCCC
TGGCTCGATC GGCTTATGCA ACGCTCGCGC CAGGCCGGAT TGCCCTGGGA AGTCGTGCAG
GCGCTGCTGG ACGGCGTGCG CCAGGACATC GGGCCGGTCC GGGTGGCTTC CTATGAAGAA
CTGGATCGCT ACGCCTACCG CGTGGGTTCG ACGGTGGGCG TCTGGATGTG CTATCTGATG
GGGGTGCGCA TGCCCCGATT GCTTGCGCGC GCCGAAGCGC TCGGCCGCGC CATGCAGTAC
ACGAACATCG TGCGCGACGT GGGGGAAGAT CTGCAGCGCG ATCGCCTCTA TCTGCCAGCG
GATCGGATGG CCGCCTATGG ACTGGACCTC GCGGATCTGC TACGTATGCA GCAGACCGGC
GTGCTCGATC CTTCCTATGT GGCGCTGCTG GAAGAACTCA TGCAGCAGGC CGAGCGCGAC
TATGAGGCCG CCTGGGAGGC CATTCCGGCC CTGCCACCGC GCGTTCGCGG TGCCATTGCC
GTGGCCGCCG AGGTCTATCG GGGGATTCAT GCAGTGCTTC GCCAGAACCA CTACGACAAT
CTGACGCGTC GCGCCTACAC GACGCTCCCC GAAAAAATCG GTCTTTCGGT GGCTGCACTG
CGTCGCCTGC GTCGGGCGGT TTTGATAACA GGTATGCAGG CCCTATGA
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| Protein sequence | MSRFDRLLLY GLYGFTIIAV AGFGIFGRHP ELLVRWPELA AFYARSFALF ARVHVLLTAF
VLFAYMGRRV GGRWVPAGLL VYGVSLLSET LGTTYGVPFG TYGYTTLLGG KWFGRVPYLI
PLSWFVMAVP CYVLARAAFS ERRQWPARLL LATYLLVAWD LSLDPAMSYL TSYWTWGETG
PYYGMPLINL AGWALTGLVI MGVLEAMRAF RWTEAFSVQW MAVFYGAVLL MPLGMVAVAG
LWGAVAATVA ALGLAGSVVW LIRRRRPRMD TKGALPARDA FEEDGTRFFA AHARSFSFAA
RLFPKDFRRE VVLLYGFCRL TDDLVDGAST QVAPELLQKR LDRWQRQVRM AYEGRPSGLP
WLDRLMQRSR QAGLPWEVVQ ALLDGVRQDI GPVRVASYEE LDRYAYRVGS TVGVWMCYLM
GVRMPRLLAR AEALGRAMQY TNIVRDVGED LQRDRLYLPA DRMAAYGLDL ADLLRMQQTG
VLDPSYVALL EELMQQAERD YEAAWEAIPA LPPRVRGAIA VAAEVYRGIH AVLRQNHYDN
LTRRAYTTLP EKIGLSVAAL RRLRRAVLIT GMQAL
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