Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg_7229 |
Symbol | |
ID | 8022935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
Kingdom | Bacteria |
Replicon accession | NC_012858 |
Strand | + |
Start bp | 653619 |
End bp | 654761 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644834061 |
Product | type II secretion system protein E |
Protein accession | YP_002985195 |
Protein GI | 241667111 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0403713 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.175267 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCCG TATCCGACGA CGCTGCCGAA CAGGCCACCT TCCAGGTCCT GACCCGGGCG CTGGACAAGC TGCTTGGGCC GATCCGTTTT CTCCTCGATG ATCCGAGCGT GTCCGAAATC CTGATCAACG GCACATCCGA CATTTTCGTC GAAAGGCGAG GCAAGCTCGA ACGCGCCGAT ACGCGTTTCG CCAGTCGTGA GGATCTGGAA TCGGCCGCGC GCAGCATCGC GCAGTTCTCA GGCAAGCGGC TGACGCCGGA GGAACCGAGC GTCGAGGCCC GTCTGCCGGA TGGTTCGCGC GTGCAGATGA TCCAGCCGCC CGCGTCGCGC ACCGGGCTTT GCATCTCCAT CCGCCGCTTT CTGAAAGAAC ATCGCAGCAT CCACGATCTC GTCACCCAGG GCAGCCTGAC CGACGAGTCG CTGACGCTGC TGCAGGCCGC CGTTGGGCTG CAAAAGAACG TCATCATCTC CGGCGGCACC GGCACCGGCA AGACGACGAT GCTGAACGCG CTGTCGGAAG CCTTTGCCGA CCACGAGCGC ATCATCGTCA TTGAAGACAC GTCCGAACTG CAGATCCGTA AGGAACACGT GGTCTATCTC GAAGTGACGA AGCCCGATCG GTTCGGCCGC GGCGGCGCCA GCATCCGCGA CCTGTTCCGC TCGTCGCTGC GCATGCGGCC CGACCGGGTC ATCGTCGGCG AGTGCCGCGG CGGCGAGGCG CTCGATATGA TCCAGGCAAT GACATCAGGT CACAGCGGCA GCCTTTCGAC GGTGCATGCG AATACGCCCT ATGACTCCCT GCACCGGCTG GAAACGCTGG CGCTGATGTC TGATATCGAC ATGCCGCTTC GGCCGCTGCG CGCCCAGATC GCCTCGGCGG TCGACGTCGT CGTGCAGATC GCCCGCTTCA AGCGCACAGG AAGGCGCCGG GTGGTCGAGA TTTCCGAGAT CAAGGGCCTG AACAATGACG GCCAGTATAT CGTCGAAAGC ATCTACAAGC TCGAGGGCGA CGGCCATTCC AATCCCGACG GCGCACTGCT GTGGACCGGT GTAGTACCGA GCTTTGCCGC CGATGCGCTG GAGGAGCTGC AAGGCGCGGC GCGCCCCGAA TGGGTCGGCG CCGCCTCGCT GCATACAGCT TGA
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Protein sequence | MKAVSDDAAE QATFQVLTRA LDKLLGPIRF LLDDPSVSEI LINGTSDIFV ERRGKLERAD TRFASREDLE SAARSIAQFS GKRLTPEEPS VEARLPDGSR VQMIQPPASR TGLCISIRRF LKEHRSIHDL VTQGSLTDES LTLLQAAVGL QKNVIISGGT GTGKTTMLNA LSEAFADHER IIVIEDTSEL QIRKEHVVYL EVTKPDRFGR GGASIRDLFR SSLRMRPDRV IVGECRGGEA LDMIQAMTSG HSGSLSTVHA NTPYDSLHRL ETLALMSDID MPLRPLRAQI ASAVDVVVQI ARFKRTGRRR VVEISEIKGL NNDGQYIVES IYKLEGDGHS NPDGALLWTG VVPSFAADAL EELQGAARPE WVGAASLHTA
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