Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_4400 |
Symbol | |
ID | 3960014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007901 |
Strand | - |
Start bp | 164830 |
End bp | 166557 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637909608 |
Product | type II secretion system protein E |
Protein accession | YP_516084 |
Protein GI | 89885886 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAACG CCCTGCATAT TGTCGAAACG CCAGCGCTGG CTGTGCCATT GCGCACGGGG GAGATTTTGA TCCGGGACGG GGTCATTACG CGCCATCAAT TGGAGATTGC GCTAAAACAA CAACGGGTAT GGCGAAACTC CGGAAGAATT ACGCCAATCG GCGAAATTCT GCACGAGTTG CGTTTTGCCG ATCGCGCCGC CATCGAAAAT GCGGTATTGA TGACAGCCGG CTCCACGACT GGCATTTTTG AGGTCTTGCT GTCATCCGTC ACCTGTATGC GCTATCGCGT GCACCCCATT CGCATGGATG GAGAAACGTT GGTCATTCAG TCTAGGCAGC GTCTGAGTGA TCGGGAAAAG CAGCGCATTC TGGATGCATG CCATGTGTCG GCCAAGTACC TGAAAGTCGT TGCAGCTGAT CACCAGGCCA TAGCTTCGGC GCTTTCGATG CATGAAAAGC AGGATTCTTC CCTCGACATC TGGATCAGAC GCTTGCAGCA CGACCCATCG GGCTATGTGC TCAAAGCGTT CATGGGGCAC ATGATCGGGG AGGCATCTCA ACGGGATGCC TCCGATATCC ATCTAGACCG CAAGGACGAC GTCCACTCGT GGATTTCCTA CCGCATAGAT GGCGATATGA GCCAGATGTA CATGCTGCCG TCCAAATTGA TGGCCGCCAT CATCGTGCGC ATCAAAACGG AAGCGGGCAT GGACGCATCA TCTACCCAGC GTCCCCAGGA CGGGCGCATC AGTCTTGATT CGCGCCACCA AAAACTTGAC ATCCGGGTCT CCTCGCAACC CATCGCAGGG GGTGAGACGA TTGCACTTCG ACTGCTCAGC TCGGACTCCA TCAAGTCTTT GAACATCTTG TTTCCGCAGC AGCCTGAACT GATTGCGCAC CTCAAGAAGC TGACCCGTGT TGATTCAAAG ACGGGTGGGT TCATTTTGAT TTCCGGCGCG ACTGGAATGG GGAAGTCCAC CACGTTATAT GCGTTGTTGC AAGAACTCGA CAGGGACCGA CTCAACGTCA TGACGGTTGA AGACCCTGTG GAATATCAGT TGGCGTTTCT CAGGCAGATC CAGCTCAATC AGTTTTTGGG CGAGCAAGCT ACGGATATGG AGAGATCACT ATTGCGTCAG GACCCGGATG TGCTCGTATT TGGCGAAATG CGCGACGAGA ACTCGACAAT TGCCGCATTG CGCCTGGCTG AATCGGGCCA CCTGGTGATC TCTACCATTC ACGCCAATGA CGCGGTACAG ACGTTCGAGC GGCTTGCCAA TAAAGTGGGC GAAGCAAACC GCGATGACAT GCTCTACATC CTGGGCAGCT ATCTCAAGGC GATTATTGCC CAGCGCCTGA TCAAGAAGCT GTGCCTTTGC GCGCGCCCCG CCACACCTGA ATATCGTTCG CTTCATGCAC AGACCGCGGC GGATTTGGGC ATCAGCGATG AAGCCACTGG TTTGCTGGAG CCAGGAAAAT GCAAGGCATG CAACAACACG GGGTACCGGG GGCGCGTCAT GCTGCACGAG ACCTTGCTGA TACCCGATGA CGATCTTGTT CGCAAAAATT TGCTCACGGC GATCACGTCC CCTAACGGTT TCTCATCAAT CTTGGACGTA CCGGGTGTGA AACACATTGC CCGCACGGAT ACCCTGCGCA CGCTGGTTTC ATCCGGTGTG ATTCCTCTGG GGTTTGCAGC GCTTCAAATG GGGGTATCAG CATCATGA
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Protein sequence | MSNALHIVET PALAVPLRTG EILIRDGVIT RHQLEIALKQ QRVWRNSGRI TPIGEILHEL RFADRAAIEN AVLMTAGSTT GIFEVLLSSV TCMRYRVHPI RMDGETLVIQ SRQRLSDREK QRILDACHVS AKYLKVVAAD HQAIASALSM HEKQDSSLDI WIRRLQHDPS GYVLKAFMGH MIGEASQRDA SDIHLDRKDD VHSWISYRID GDMSQMYMLP SKLMAAIIVR IKTEAGMDAS STQRPQDGRI SLDSRHQKLD IRVSSQPIAG GETIALRLLS SDSIKSLNIL FPQQPELIAH LKKLTRVDSK TGGFILISGA TGMGKSTTLY ALLQELDRDR LNVMTVEDPV EYQLAFLRQI QLNQFLGEQA TDMERSLLRQ DPDVLVFGEM RDENSTIAAL RLAESGHLVI STIHANDAVQ TFERLANKVG EANRDDMLYI LGSYLKAIIA QRLIKKLCLC ARPATPEYRS LHAQTAADLG ISDEATGLLE PGKCKACNNT GYRGRVMLHE TLLIPDDDLV RKNLLTAITS PNGFSSILDV PGVKHIARTD TLRTLVSSGV IPLGFAALQM GVSAS
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