| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4121 |
|---|
| Symbol | |
|---|
| ID | 3961819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4597376 |
|---|
| End bp | 4598866 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637918945 |
|---|
| Product | hydrogen:quinone oxidoreductase |
|---|
| Protein accession | YP_525350 |
|---|
| Protein GI | 89902879 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCC TGATTCTTGG CCCTTTTAAC CGCGTCGAGG GTGACCTCGA AGTCCAGCTG
GAAGTCACCG ATGGCCGGGT CACTGAGGCC CGCGTCAACG CCCCGATGTT CCGCGGTTTC
GAGCTTATCC TGAATGGCCG TGACCCGATG GATGCTTTGA GCATCGCGCC GCGTATTTGC
GGCATTTGCT CGGTCTCTCA GTCGGTGGCG GCAGCCAAGG CGCTGGCCGA TGCGTCAGGC
GTGGTGGTGC CGCCCAACGG CATGCATGCC ATCAACCTGA TGCTCGCGTG CGAGAACTTT
GCCGACCATC TGACGCATTT TTATCTGTTT TTCATGCCCG ACTTCACGCG CGCGGTGTAT
GCCGCCCGGC CCTGGTTTCG GGAAGCCGAG CGGCGCTTTG CAGCACTGGC TGGCAGCACC
TCCAACGGCG GCCTGCGCAG CCGCGCAGCA CTGGCGGCGC GCGCGCGCTG GTTTGAGCTG
ATCGGCACGC TGGGCGGCAA ATGGCCGCAC ACCGGCGCCG TGCTGCCGGG GGGCACGTCA
CGCGCGATCG AGACCACCGA GCGCATTCGC CTGCTGGCGC GGGTGCGCGA GATGCGCGCC
TTTCTGGAGC AAACGCTGTT TGGCACAGCG CTGGAAGAAG TGGCAACGCT TGACAGCCTG
GCCGCCTTGC AGCGCTGGCG CGCGCGTGCT GCGGGCAGCG ACATGGCGCT GTTTCTTGAC
CTGGCCGAGG CGACCCAGTT GACGAATTTG GGGCCGGGAC CGGGCCGCTA CCTCAGCTAC
GGCGCCTACG CCCGGTTTGA AGGTGGTCAC GCCTTGGCGC GCGGGGTTTG GGACGCCGCC
CTGCAGCAAG GCCTGCCGCT CGACCCGACG CAGATCAGCG AAGACGCGCG CCACGCCTGG
TACGCTGAAA GCACCAGCGC GCAAGCCCTG CACCCGATGG CCGGCCTGAC CCAACCCGAG
CCGGACAAGC CGGGCGCCTA CAGCTGGAAC AAGGCGCCGC GCTTAGGGAG CCAGGTGGTT
GAGACCGGCG CCATTGCGCG GCAACTGGTG GACGGCCAGC CCCTGATCCG CGCCGCCGTG
TTGGCGCATG GCGGCACGGT TTATACCCGG GTGCTGGCGC GCTTGCTGGA GATGGCCCGC
ATCCTGCCGC TGATGGAGCA GTGGCTGCTG GCGCTGCAGC CACACGCGCC GTTTCATGCG
GTGCAGGCGC AGCCCGAGCA GGCGCAAGGC ATCGGGCTGA CCGAGGCGGC ACGCGGTGCG
CTCGGGCACT GGCTGCGCAT CGAGAACGGT CGTATTGCGC ATTACCAGAT CGTGGCACCC
ACCAGTTGGA ACTTTTCGCC GCGCGATGCG GCGGGCACGC CCGGCGCGCT GGAAGCCGCG
CTGGTGGGCG CACGGCTTGA CAACGCCATT GAGGGCGCCG GTGGCCAGAG TGTGGCGGTG
CAGCACATCG TGCGTTCGTT TGATCCGTGC ATGGTCTGCA CGGTGCATTG A
|
|---|
| Protein sequence | MSRLILGPFN RVEGDLEVQL EVTDGRVTEA RVNAPMFRGF ELILNGRDPM DALSIAPRIC
GICSVSQSVA AAKALADASG VVVPPNGMHA INLMLACENF ADHLTHFYLF FMPDFTRAVY
AARPWFREAE RRFAALAGST SNGGLRSRAA LAARARWFEL IGTLGGKWPH TGAVLPGGTS
RAIETTERIR LLARVREMRA FLEQTLFGTA LEEVATLDSL AALQRWRARA AGSDMALFLD
LAEATQLTNL GPGPGRYLSY GAYARFEGGH ALARGVWDAA LQQGLPLDPT QISEDARHAW
YAESTSAQAL HPMAGLTQPE PDKPGAYSWN KAPRLGSQVV ETGAIARQLV DGQPLIRAAV
LAHGGTVYTR VLARLLEMAR ILPLMEQWLL ALQPHAPFHA VQAQPEQAQG IGLTEAARGA
LGHWLRIENG RIAHYQIVAP TSWNFSPRDA AGTPGALEAA LVGARLDNAI EGAGGQSVAV
QHIVRSFDPC MVCTVH
|
|---|
| |