| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3849 |
|---|
| Symbol | |
|---|
| ID | 3961451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4299125 |
|---|
| End bp | 4299715 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637918674 |
|---|
| Product | putative sigma 54 modulation protein/ribosomal protein S30EA |
|---|
| Protein accession | YP_525079 |
|---|
| Protein GI | 89902608 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
|---|
| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGG ATGCCAGCAA AGGGGACAAG ATGAAGCTTC CGGTTCACAT TCAATTTCAC
GACATGGAGC CTTCCGACGC GCTTGAGGCA AGCGCGCGTG AACATGCGCA CAGGCTCGAA
TCCTTCGCCC CCGACATCAT GGCTTGCCAT GTCCATATCG ACCTGGAACA GAAGCACAAA
CATCAGGGCC GCCCTTTCGG TGTGCGCATC GACGTCACGC TGCCGGGCCA CGAACTGGTG
GTGAACCGGG TCCAAAACGA AGACGTATAC GTGGCGCTGC GCGATGCTTT CGACCACATG
AAACGCCAGC TTGAGGACGT CGTGCGCAAG CGCAGGAGGC AGGAGAAGCA GCACGCACTG
GCGCTGCATG GCGAGCTCGT GCGCCTGGAC GATGCCGGGG GGTTTGGTTT CATCCGTACA
CCTGCTGGCG ACGAGTATTA CTTCAGCCGC GACAACGTGG CGGGTACGCC GTTTGAGCAC
CTGCAGATTG GCAGCGCCGT GCAGTTCATT CCCGAAGCGG GTGATGAAGG ATTCCAGGCC
AAGCGCGTGA GTCTGGGCAA GCATGGCATG GGTGAACCGC CAGCCGAATG A
|
|---|
| Protein sequence | MKPDASKGDK MKLPVHIQFH DMEPSDALEA SAREHAHRLE SFAPDIMACH VHIDLEQKHK
HQGRPFGVRI DVTLPGHELV VNRVQNEDVY VALRDAFDHM KRQLEDVVRK RRRQEKQHAL
ALHGELVRLD DAGGFGFIRT PAGDEYYFSR DNVAGTPFEH LQIGSAVQFI PEAGDEGFQA
KRVSLGKHGM GEPPAE
|
|---|
| |