Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3752 |
Symbol | |
ID | 3961101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 4183652 |
End bp | 4185325 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637918578 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_524983 |
Protein GI | 89902512 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.419437 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACC GTATTTGGCT TAGCAGCTAC CCCGATGGCG TTCCCGCTGA TATTGATCCG GGCAAGTACT CGTCGATTGT GAAGATGATG GAGGAGAGCT TCAAGAAGTA CGCCGACCGG ACCGCCTACA GTTTCATGGG CAAGACGCAG AGTTACAAAC AGGTCGATAG CCTGAGTCTT GCGTTTGGGG TTTACCTGCA AGGTTTGGGG CTGGTCAAAG GCGACCGGGT TGCAGTGATG ATGCCCAATG TGCTGCAGTA TCCGGTGGCG GTGGCCGGCA TTTTTCGTGC CGGCTATATC CTAGTGAATG TCAATCCGCT GTACACCGCG CGTGAGCTGG AGCACCAACT CAAGGATTCG GGCGCCAAGG CCATTGTCAT TCTGGAAAAT TTTGCTTCGG TTCTGGAAAA ATGTGTTGCT GCGACGCCGG TCAAGCACGT GGTGTTGTGC GCGATGGGTG ACCAGTTGGG CCTCCTCAAA GGCGCACTGG TCAATTATGT CGTGCGCAAC AAGAAAAAAC TGGTGCCCGC GTTCTCGCTG CCAGGCGCCG TGCGCTTCAA TGCCGCCGTT GCCAAGGGCA GTGCGGGGAC GCTCAAAAAA ATAACGCTCA AGCCCGACGA TGTGGCGGTG CTGCAATACA CCGGCGGTAC TACCGGCGTC TCCAAGGGCG CGGTGCTGCT CCATCGCAAC CTGGTGGCCA ACTTGTTGCA GGTGGAGGCC TGGAATGAAC CGGCGCTGAA GAAGATTCCG GCCAACGAGC AGTTGACGTC GGTCTGCGCC TTGCCGCTGT ACCACATCTT TGCCTTCACG GTGGGCATGA TGCTGTCGAT GCGCCTGGGC GGCAAGCTGA TTCTGATTCC GAATCCGCGC GACCTGGTGG CCACGCTGGC TGAATTGGCC AAACACAAAA TCCATGTGTT TCCGGCGGTC AACACCTTGT TCAATGGCCT GGCCAATCAT CCCGATTTCA ACAAGGTGGA CTGGCGTGGT CTGGTGGTGT CCGCAGGCGG CGGCACGGCG GTCCAAAGTG CGGTGGCCAA GCTCTGGTTC GAGAAAACCG GCTGCGCCAT TGCCGAGGGC TACGGTCTGA GCGAGACCTC GCCGGTGGCC ACGTCGAACC CGGTCACCGT CACCGAGTAC TCGGGCACGA TTGGTGTTCC GATTTCAAGC ACTTATCTGA GACTGCTCGA TGACGATGGC AAGGAAGTGC CGATCGGTCA ATCCGGCGAG ATTGCCATCA AGGGCCCCCA GGTGATGGCC GGCTATTGGC AGCGCCCGGA TGAGACCGCC AACGTCATGA CTGCCGATGG GTATTTCAAG TCCGGCGACA TCGGCGTGAT GGATGAGCGC GGTTACTTCA AAATTGTGGA CCGCAAGAAG GACATGATTC TGGTCAGCGG CTTCAACGTC TTCCCCACCG AGTTGGAGGA CGTGGTGTCC CAACTCAAGG GGGTTATGGA GTGTGCTTGC GTCGGTGTGC CGGACGCCAA GTCCGGTGAG GCTGTCAAGC TGGTGATTGT CAAGAAAGAC CCGAGCTTGA CCGAAGCGCA GGTGCGGGCC TACTGCAAAG AAAATCTAAC CGGCTACAAG CAACCCAAGG TGATTGAGTT CCGCGCCGAA TTGCCAAAAA CTCCGGTCGG CAAGATTTTG CGGCGAGAGT TGAGAGATAA GTAA
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Protein sequence | MTDRIWLSSY PDGVPADIDP GKYSSIVKMM EESFKKYADR TAYSFMGKTQ SYKQVDSLSL AFGVYLQGLG LVKGDRVAVM MPNVLQYPVA VAGIFRAGYI LVNVNPLYTA RELEHQLKDS GAKAIVILEN FASVLEKCVA ATPVKHVVLC AMGDQLGLLK GALVNYVVRN KKKLVPAFSL PGAVRFNAAV AKGSAGTLKK ITLKPDDVAV LQYTGGTTGV SKGAVLLHRN LVANLLQVEA WNEPALKKIP ANEQLTSVCA LPLYHIFAFT VGMMLSMRLG GKLILIPNPR DLVATLAELA KHKIHVFPAV NTLFNGLANH PDFNKVDWRG LVVSAGGGTA VQSAVAKLWF EKTGCAIAEG YGLSETSPVA TSNPVTVTEY SGTIGVPISS TYLRLLDDDG KEVPIGQSGE IAIKGPQVMA GYWQRPDETA NVMTADGYFK SGDIGVMDER GYFKIVDRKK DMILVSGFNV FPTELEDVVS QLKGVMECAC VGVPDAKSGE AVKLVIVKKD PSLTEAQVRA YCKENLTGYK QPKVIEFRAE LPKTPVGKIL RRELRDK
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