Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3612 |
Symbol | |
ID | 3962705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 4025110 |
End bp | 4028451 |
Gene Length | 3342 bp |
Protein Length | 1113 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637918431 |
Product | methylmalonyl-CoA mutase |
Protein accession | YP_524846 |
Protein GI | 89902375 |
COG category | [E] Amino acid transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1703] Putative periplasmic protein kinase ArgK and related GTPases of G3E family [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit [COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACC TGTCCGCTGA TTTCAAGGCC CTGGCCCAAT ACCGCCCCAC CCACAAGGTG CGCTTCGTGA CCGCCGCCAG CTTGTTCGAT GGCCATGATG CGGCTATCAA CATCATGCGC CGCATCCTGC AAAGCATGGG CGCCGAGGTG ATTCACCTCG GGCACAACCG CAGCGTCGAA GAGGTGGTGA CCGCCGCCCT GCAGGAAGAT GCGCAGGGTA TTGCCATCAG CTCCTACCAA GGCGGGCATG TCGAGTACTT CAAGTACATG GTGGACCTGC TCAAAAGCCG GGGCGGCGCG CACATCCAGG TCTTTGGCGG CGGCGGTGGC GTCATCGTGC CGCCGGAAAT CCGCGAGTTG CAGGCCTATG GCGTGGCGCG CATCTTCAGC CCGGAAGACG GCCAGCGCAT GGGCCTGGCC GGCATGATTG GCGAGATGGT GATGCGCTGC GACCAGGACC TCACGGGCCT GGCGCCCAAG AGCATCGACG CCATTCAGGG CCACACCGAG ATGAGCTGGC GCGCCCTGGC GCAGCTCATC ACGGCGCTGG AAAACGAAAA CGCAGCGGGC CAGGCCAAAG GCAAACTTTC CAAACCATTA ATGGCGCTAG CCAAGGAAAT ACGGGCGCAA GCTGCTACCA AAAAGATACC GGTTCTGGGT ATCACCGGCA CCGGCGGCGC GGGCAAGTCG TCGCTCACCG ACGAGCTGAT TCGTCGTCTG CGGCTCGATC AGAACGACAG CTTGCGCGTG GCCATGATCA GCATCGACCC GTCACGGCGC AAGAGCGGCG GTGCGCTGCT GGGCGACCGC ATCCGCATGA ATGCGATCAG TCCCTGGAGT CAGGGGCCGC GTGTGTTCAT GCGTTCGCTC GCCACGCGTG ACTTTGGCTC AGAAATCAGC GCGGCGCTGC CCGACGTGAT TGCCGCTTGC AAGGTGGCGG GCTTTGACCT GATCGTGGTC GAGACCTCGG GCATTGGCCA GGGTGACGCG GCGATCGTGC CGCATGTGGA TGTGCCCCTG TATGTGATGA CGCCCGAGTT TGGCGCCGCC AGCCAGCTGG AAAAAATCGA CATGCTCGAC TTCGCCGAGT TTGTCGCCAT CAACAAGTTC GACCGCAGGG GCGCGCTCGA TGCCTTGCGC GATGTCGCCA AGCAGGTGCA GCGCAACAAG GAAGCTTTCG GTACGCCGCT GGAGCAAATG CCGGTGTTTG GCACCATGGC GGCGCGCTTC AACGACGACG GCGTCACCGC GCTGTACCAG GCGCTCAGAG CGCGCCTGGG TGAACTCGGC TTGCCACTGG GCGAGTCGCA TCTGCCGCCG GTGGCGGTGC GCCACAGCAC CAACCAGACC CCGGTGCTGC CGGCCGCGCG CACCCGCTAC CTGGCAGAAA TCAGCGACAC CGTGCGCGCC TACAAAAAGC GCGCGCGCAG CCAGGCCAAA TTGGCGCGTG AAGTGCAGCA GCTCAAGGCC ACGGCGCAAA TGTTGCTGGC ACACGACCCG TGCAAGGATG GATCAAACAA ACCCGGCGCT TACGGAACCG TGCTTGACCT GGCCAAGGAG CGTGCCGAGC TGCAGGACGC AGCTTGCGCC AAGCTGCTGG CGCAGTGGCC CACCATGCAA ACAGCCTATG CGGGTGATGA GTACGTGGTC AAAATCCGCG ACAAGGAAAT CCGCACCGCG CTCACCAGCA AATCCTTGAG CGGCACCACC ATCCGCAAAG TGTGCCTGCC GCAATACGAA GACCATGGCG AAATCCTGAA ATGGTTGATG TTGGATAACG TGCCCGGCAG CTACCCCTAC ACCGCCGGCA CCTTCGCTTT CAAGCGCGAA GGCGAGGACC CGACCCGCAT GTTTGCCGGT GAAGGCGACG CGTTTCGCAC CAACACGCGT TTCAAATTGC TCAGCTCGGG CATGGCGGCC AAGCGTTTGA GCACTGCGTT TGATTCGGTC ACGCTGTATG GCAACGACCC CGATCCGCGT CCCGATATCT ACGGCAAGGT CGGCAACTCG GGCGTCAGCA TCGCGACGCT CGACGACCTC AAGGTGCTCT ACAGCGGCTT TGACTTGTGC AGCCCGTCCA CCAGCGTCAG CATGACCATC AACGGCCCGG CGCCCAGCAT CCTGGCGATG TTCATGAACA CCGCGATTGA CCAGAATATC GACAAATTCA AGCTTGATAA TGGCCGCGAG CCGACCGACA CCGAGACGGA GAAGATCAAG GAATGGGTGC AGGAGAACGT GCGCGGCACG GTGCAGGCCG ACATCCTGAA AGAAGACCAG GGGCAGAACA CCTGCATTTT CAGTACCGAA TTTTCACTGA AGGTGATGGG CGACATCGCC GAATATTTTG TGCACAACCG GGTGCGCAAT TTTTACAGCG TGTCGATCAG CGGCTACCAC ATTGCCGAAG CCGGGGCCAA CCCGATTTCG CAACTGGCAT TCACCTTGTC CAACGGCTTC ACCTTTGTCG AGGCCTACCT GGCGCGGGGC ATGCACATTG ACGACTTTGC GCCCAACTTG AGCTTCTTCT TCAGCAACGG CATGGACCCT GAATACACCG TGATGGGTCG CGTCGCGCGC CGCATCTGGG CCGTTGCCAT GAAAGAAAGA TACGGCGCCA ACGAGCGCAG CCAAAAGCTC AAATACCACA TCCAGACCAG CGGGCGCAGC CTGCACGCAC AGGAGATCCA GTTCAACGAC ATCCGCACCA CGCTGCAGGC CTTGATCGCC ATTTACGACA ACTGCAACAG CCTGCACACC AACGCTTTCG ACGAAGCCAT CACCACGCCG ACCGAAGACT CGGTGCGCCG CGCCATGGCG ATCCAGCTCA TCATCAACCG CGAATGGGGT TTGGCCAAGA ACGAAAACCC GTCGCAAGGC GCCTTCATCA TCGAGGACCT GACCGAGTTG GTGGAAGAAG CGGTGCTGCT CGAATTTGAG CGCATTTCCG AGCGCGGCGG TGTGCTCGGG GCCATGGAAA CCGGCTACCA GCGCGGCAAG ATTCAGGACG AATCGATGCA CTACGAAATG CTCAAGCACA CCGGCGAGCT GCCCATCATC GGCGTCAACA CCTTTCGCAA CCCGCACGGC GACGCCGTGC ACGACACGCT GGAGCTGGCC CGCTCAACGG AGGAAGAAAA ACAAAGCCAG CTCAAGCGCC TGGCCGACTT CCACGCGCTG CACGCCAAGG AGGCGCCCGC GATGCTCAAA CGCCTGCAAA AAGCCGTGAT CGACAACAAG AACGTGTTTG AAGTGCTGAT GGACGCCGTG CGCTGCTGTT CCCTGGGCCA GATCACCAAT GCGCTGTTTG AGGTTGGCGG GCAGTACAGA AGGAATATGT GA
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Protein sequence | MTDLSADFKA LAQYRPTHKV RFVTAASLFD GHDAAINIMR RILQSMGAEV IHLGHNRSVE EVVTAALQED AQGIAISSYQ GGHVEYFKYM VDLLKSRGGA HIQVFGGGGG VIVPPEIREL QAYGVARIFS PEDGQRMGLA GMIGEMVMRC DQDLTGLAPK SIDAIQGHTE MSWRALAQLI TALENENAAG QAKGKLSKPL MALAKEIRAQ AATKKIPVLG ITGTGGAGKS SLTDELIRRL RLDQNDSLRV AMISIDPSRR KSGGALLGDR IRMNAISPWS QGPRVFMRSL ATRDFGSEIS AALPDVIAAC KVAGFDLIVV ETSGIGQGDA AIVPHVDVPL YVMTPEFGAA SQLEKIDMLD FAEFVAINKF DRRGALDALR DVAKQVQRNK EAFGTPLEQM PVFGTMAARF NDDGVTALYQ ALRARLGELG LPLGESHLPP VAVRHSTNQT PVLPAARTRY LAEISDTVRA YKKRARSQAK LAREVQQLKA TAQMLLAHDP CKDGSNKPGA YGTVLDLAKE RAELQDAACA KLLAQWPTMQ TAYAGDEYVV KIRDKEIRTA LTSKSLSGTT IRKVCLPQYE DHGEILKWLM LDNVPGSYPY TAGTFAFKRE GEDPTRMFAG EGDAFRTNTR FKLLSSGMAA KRLSTAFDSV TLYGNDPDPR PDIYGKVGNS GVSIATLDDL KVLYSGFDLC SPSTSVSMTI NGPAPSILAM FMNTAIDQNI DKFKLDNGRE PTDTETEKIK EWVQENVRGT VQADILKEDQ GQNTCIFSTE FSLKVMGDIA EYFVHNRVRN FYSVSISGYH IAEAGANPIS QLAFTLSNGF TFVEAYLARG MHIDDFAPNL SFFFSNGMDP EYTVMGRVAR RIWAVAMKER YGANERSQKL KYHIQTSGRS LHAQEIQFND IRTTLQALIA IYDNCNSLHT NAFDEAITTP TEDSVRRAMA IQLIINREWG LAKNENPSQG AFIIEDLTEL VEEAVLLEFE RISERGGVLG AMETGYQRGK IQDESMHYEM LKHTGELPII GVNTFRNPHG DAVHDTLELA RSTEEEKQSQ LKRLADFHAL HAKEAPAMLK RLQKAVIDNK NVFEVLMDAV RCCSLGQITN ALFEVGGQYR RNM
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