Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3288 |
Symbol | |
ID | 3962435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3650271 |
End bp | 3651830 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637918108 |
Product | NADH-ubiquinone oxidoreductase, chain 49kDa |
Protein accession | YP_524528 |
Protein GI | 89902057 |
COG category | [C] Energy production and conversion |
COG ID | [COG3261] Ni,Fe-hydrogenase III large subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.14856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGATTT CTGGCTTCGA CGTTGATCTC CAATGTGTGA TGGCACCCGT GCCGATCTGG CACGCGCGGG TCACCGTGGA TGAGTGGCGC GCCGCCGCTG CGGCCGTGCG CGAGGGGGGC GGGCGCTTGC TGGCGATGTG GGGCGGAGCA GGGCTGGCGG ACGAGCCAAC GGTGCTTGCC TGCGCCGCCT ATGTGGTGTT GGAGGGTTTG ATCTGGCTGG AGTTGCCACA GAGCGGCGAG CAGCTGACTT ATCCTGACCT GCTGCCTTTC TTTCCCGCCG CCGCCAGAAT GCAGCGGGCC GCGGCCGAGT TGTCGGGTAT TCGCACCAAG GGCAGCAAAG ACCAGCGTCC GTGGCTGAAC CACGGTGCCT GGCCCCTGGA CTATTTTCCC CTGCGCCACG CCGGCGAGGC GCCGCCGCCA TTTCCTGAGG AAGCCTTGGT CGATTACCCG TTCGTCCGCG TCGAAGGCGA TGGCGTGCAT GAAATCGCGG TGGGTCCGGT GCATGCCGGC ATCATTGAGC CTGGGCATTT TCGCTTTTCG GTGGTCGGCG AAAAAGTACT GCGCCTGGAG CAGCGCCTGG GCTACACACA CAAGGGTATT GAGCAGCGCA TGACCCAGTT GGACCCGCTG CTGGCGTATC GCCTGGCCGG TCGGGTCTCG GGTGACTCAA CCGTCGCCTA CGCCTGGGGT TATTGCATGG CCTTGGAGTC GGCCAGCGCC TGCGCGGTGC CGCCCCGGGC CTTGTGGATG CGCGCCTTGA TGCTCGAGCG CGAGCGCGTT GCCAACCATC TGGGTGATCT GGGGGCCTTG GGCAACGACG CCGCCTTCGC GTTTGGCCTG GCCCAATTTT CCCGTCTGCG CGAAGACTGG CTGCGCTTGT CCAAGGAGAT GTTTGGACAC CGTTTGATGA TGGACTGCGT GCTGCCCGGC GGTGTGACGC ATGACATTCA TGGCGCCCAT ATTGACCAAC TGACCCGGCA ATGCGACGCT GTGGAGCGCG AGGTGCGGAC CTTGCGTTCA ATCTACGAAG AGCATGCCGG CTTGCAGGAT CGCTTCATGA CCACCGGGCG GGTTACGCCG GCGCTGGCGG CCCAGTTGGG CTTGACCGGT CTGGCCGGGC GGGCCAGTGC ACAGGCGTGG GACTTGCGCT GTGATCATGC GGCTGCGCCG TATGACGTAT TGCAGGTCAA GATGGCCACG CACAGCAATG GCGACGTGGC AGCCCGAGTG AGCGTGCGCT TTGATGAAGT GTTTGAGTCG ATGCGGCTGA TCCGGCAAAT TCTTGCCGGT CTGCCAGCCG GCCCCTTGCG CCAGGACATT GCTTTGCCCG GGCAGGCGAG CCGCGGGGCG GGTTGGGTGG AGGGCTGGCG GGGCGAGATT TTTGTCGCGC TGGAGCTGAG CGGTGCCAGC AGCGATCAGC GCATTCGACG CTGCCATTTG CATGATCCCT CCTGGCAGAA CTGGCCCGTG CTGGAGCACG CCGTCATGGG CAATATCGTG CCCGACTTTC CGCTCATCAA CAAGTCGTTC AACCTCAGCT ATTCCGGGCA CGATTTATGA
|
Protein sequence | MKISGFDVDL QCVMAPVPIW HARVTVDEWR AAAAAVREGG GRLLAMWGGA GLADEPTVLA CAAYVVLEGL IWLELPQSGE QLTYPDLLPF FPAAARMQRA AAELSGIRTK GSKDQRPWLN HGAWPLDYFP LRHAGEAPPP FPEEALVDYP FVRVEGDGVH EIAVGPVHAG IIEPGHFRFS VVGEKVLRLE QRLGYTHKGI EQRMTQLDPL LAYRLAGRVS GDSTVAYAWG YCMALESASA CAVPPRALWM RALMLERERV ANHLGDLGAL GNDAAFAFGL AQFSRLREDW LRLSKEMFGH RLMMDCVLPG GVTHDIHGAH IDQLTRQCDA VEREVRTLRS IYEEHAGLQD RFMTTGRVTP ALAAQLGLTG LAGRASAQAW DLRCDHAAAP YDVLQVKMAT HSNGDVAARV SVRFDEVFES MRLIRQILAG LPAGPLRQDI ALPGQASRGA GWVEGWRGEI FVALELSGAS SDQRIRRCHL HDPSWQNWPV LEHAVMGNIV PDFPLINKSF NLSYSGHDL
|
| |