Gene Rfer_3136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3136 
Symbol 
ID3962532 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3475546 
End bp3476322 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content62% 
IMG OID637917955 
Productshort chain dehydrogenase 
Protein accessionYP_524376 
Protein GI89901905 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.473581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTGC ATTTGAAAGA CAAGGTGGTC ATCGTCACTG GAGGTGCCAG CGGCATTGGT 
GCGGCCATCT CGCTGACGCT GGCGCAAGAG GGGGCGATTC CCGTCATCCT GGGCAAAAGC
CCGATGCCGG CGGAGTTCGC CCAGCAATTG CTGGCGCTTG CCGCCAGGCA ACTCTTCATT
CAGGTCGAGC TGTCGGATGA TGCGGCCTGC CGTGCTGCGG TTGAGCAGGT GGTGCGCGAC
CTGGGCCGCG TGGACGGCCT GGTGAACAAC GCCGGCATCA ACGACAACGT TGGCCTGGAC
GCCGGGCGTG ATGCCTTTGT GGGCTCACTG GAGCGCAACC TGATTCACTA CTACGTGATG
GCGCACTACT GCGTGCCGCA CCTCAAAGCC AGCAAGGGCG CCATCGTCAA CGTGTCGTCC
AAGACCGCTG TCACCGGCCA GGGCAACACC AGCGGCTATT GCGCCTCCAA GGGGGCGCAG
CTGTCGCTGA CCCGTGAGTG GGCGGCGGCG CTGCTGGGTG ATGGCGTGCG GGTGAATGCG
GTGATACCGG CGGAGGTGAT GACGCCTCTG TACGCGCGCT GGATCAACAG CTTTGACGAC
GCGCAAGAAA AACTGTCCAG CATCACCCAA AAAATCCCCT TGGGCCACCG CATGACCACC
TCGGAAGAAA TCGCGCGCAT GTGCGTTTTC CTGTTGTCTG ATGCCTCGTC CCACACCACC
GGGCAATGGA TTTTTGTGGA TGGTGGCTAC ACCCACTTGG ACCGGGCCCT GTCCTAA
 
Protein sequence
MDLHLKDKVV IVTGGASGIG AAISLTLAQE GAIPVILGKS PMPAEFAQQL LALAARQLFI 
QVELSDDAAC RAAVEQVVRD LGRVDGLVNN AGINDNVGLD AGRDAFVGSL ERNLIHYYVM
AHYCVPHLKA SKGAIVNVSS KTAVTGQGNT SGYCASKGAQ LSLTREWAAA LLGDGVRVNA
VIPAEVMTPL YARWINSFDD AQEKLSSITQ KIPLGHRMTT SEEIARMCVF LLSDASSHTT
GQWIFVDGGY THLDRALS