| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2523 |
|---|
| Symbol | |
|---|
| ID | 3961879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2782601 |
|---|
| End bp | 2783590 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637917342 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_523771 |
|---|
| Protein GI | 89901300 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.636062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGG TGCAGTCAGC GCCGATTCAG GTCTTGTTTG CCCTGCTGCC CGACAGCCTG
GCGCTGGATT GGGCTGGGCC GGCCGAGGCT TTGCGCATCG CCAATCAAGC GTTGCAGATT
CAGGGCCAGC CGCCACGCTT TGTGTTGCGC TTTGTCGGCC CCGGCAGCGA GACGGTCAGC
TCGGTGGGGC TCAAACTCAG CGGTCTTGCG GCGCTGCCTG ACACGCTGCC AGCGCCGGCT
TGGGTGGTGC TGGTTGGCCA GCCAGGCGCC ACCATTTCCG TGCAAACCGA GGCTGCTCAA
GCACTGCTGC ACTGGCTGCG CGGCCTGCGG CTGCAAACCC ACCGGCTGGA GCTGATGACG
GTGTGCGCCG GCGCGGTGCT GGCGGCTCAT GCGGGTTTGC TGGCTGGGCG GCATGTGACC
ACGCACCACC ACCATTTGGC TGAATTGCGC TCGGTGGAGC CCGACTGCCA GGTGGTGGAG
AACCGGGTCT TTGTGGAAGA CGCACCGGTG TACAGCAGCG CGGGCGTGAC CACCGGCGTG
GACCTGACCT TGCACCGCAT TGCCCAGCTG TGTGGCGAAC CCATCGCCGC GCAGGTGGCG
CAAGCCATGG TGGTAGCCCT GCGGCGCGGC CCGCAGGACC CGGAGCTGTC ACCGTTTCTG
GCTTACCGCA ACCACCTGCA CCCGGCCCTG CACCGCGTGC AGGACGCCGT CAGCAGCCAG
CCCGCTGCCG AGTGGCACCT GGCCAGCATG GCGATGGTGG CCTGTACCTC ACCCCGGCAC
TTGACGCGCT TGTTTATGGA GCATGCCGGC ATTGCGCCGC TGCAGTACCT GCGCCGCATT
CGCTTGGCCC TGGCGCAGAC GGCGCTGCAG TCCGGCCGCA ACGTCACGCA AGCGGCCGCT
TTGGCGGGCT TCAGTTCGGA CACGCAACTG CGCCGCGCCT GGCACCAACT GGGCGAAGCC
GGCACCCCGT CGAATCCAAA GTCACTATAA
|
|---|
| Protein sequence | MSLVQSAPIQ VLFALLPDSL ALDWAGPAEA LRIANQALQI QGQPPRFVLR FVGPGSETVS
SVGLKLSGLA ALPDTLPAPA WVVLVGQPGA TISVQTEAAQ ALLHWLRGLR LQTHRLELMT
VCAGAVLAAH AGLLAGRHVT THHHHLAELR SVEPDCQVVE NRVFVEDAPV YSSAGVTTGV
DLTLHRIAQL CGEPIAAQVA QAMVVALRRG PQDPELSPFL AYRNHLHPAL HRVQDAVSSQ
PAAEWHLASM AMVACTSPRH LTRLFMEHAG IAPLQYLRRI RLALAQTALQ SGRNVTQAAA
LAGFSSDTQL RRAWHQLGEA GTPSNPKSL
|
|---|
| |