Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2478 |
Symbol | |
ID | 3960294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2728586 |
End bp | 2730343 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637917297 |
Product | thiamine pyrophosphate enzyme-like TPP binding protein |
Protein accession | YP_523726 |
Protein GI | 89901255 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAGCA CATCCATCCG CCACGGCGGT GACCGCGTCG CCGAAGCCCT GCAGGCACAC GGCGTGCGCT GTGTCTTCAC GCTCTGCGGC GGTCATATTT CTCCCATCCT GAGTGCCTCC AAAGCGCGTG GCATCCGCAT CCTTGATGTG CGCGACGAAG CCACCGCGGT GTTTGCCGCC GACGCCACGG CAAGGCTGTC AGGCCTGCCA GGTGTCGCGG CCGTCACGGC GGGGCCAGGC ATCAGCAACA CCATCACGGC CCTGAAAAAT GCGCAGTTGG CGCAGTCACC GGTGATTCTC ATCGGTGGCG CTGCGCCCAC CGCACTGCAG GGGCGCGGCG CCCTGCAGGA CATCGACCAG CGCCCGCTGG TGGCGCCGCA TGTCAAGCGC TTCATCAAGA TTCAACGCGT GTCTGAACTC GGCCCCGCCG TTGATGAAGC TTTTGCCGTG GCGCAGGCCG GGGTGCCGGG GCCGGTGTTC ATCGAGTGCC CGGTTGACCT GCTGTACGAC GAGGTCTCGA TTCGCCAGTG GTATGCCGAC GCGGCGGGCA AAGGCACTTC CGTCGCCGAC CGGTTGTTGC GCTTTTATCT GAATCGCCAC GTTAAAAAGA TGTTCGATGG CAGCGCGGCG GTGAGCGCGC CGCAGGTGCG CCCCGTGCTG CCGCCGCGCG CGCCTGATGG CCGCCTGCAG GCGGCGCTGG CAGCGCTGGC CAAGGCCGAG CGGCCGCTGC TGGTGATCGG CAGTCAGGCG CTGGTGCTCT CAAAACAAGC TGAGCATCTG GCCGAGGCAG TGGCCAGGCT CGGTATCCCG GTCTATTTGT CCGGCATGGC GCGCGGCTTG CTGGGGCGCG ACCACCCGCT GCAGATGCGC CACCAGCGTC GCCAGGCTCT GCGCGAAGCC GATTGCGTGC TGCTGGCGGG CGTGCCCTGC GACTTCCGGC TCGATTACGG CAAACATGTG CGGCGCAGCG CCACGCTGAT CGCCGCCAAC CGCAGCGCCA AGGATGCGCG CCTGAACCGC AAGCCCGACA TTGCCGCCAT TGGCGACGCC GGCCTGTTCC TGCAGGCGCT GGCGCAGGCG CAACCGGCCA GCACCGCAGC CGGGTCACGC CTGGCCGCGT GGGTCGCGCA ACTGCGCGGA CGTGATGCCG CACGCGAGCT GGAGATCGAC CAGCAGGCTC AGGCCAGCGG TGAGTTCGTC AACCCGATTG CGCTGTTTCG CACGCTGGAG AACGAGCTGG GCGATAACGC CCTGCTGGTG GCCGACGGCG GCGACTTCGT GGCCACGGCC TCCTATGTGC TGCACCCGCG TACGCCGCTC AGTTGGCTCG ACCCCGGCGC TTTCGGCACC CTGGGCGTTG GGGCCGGCTT TGCACTCGGT GCCGCGCTGG CGCGTCCGGG CGGCGAAGTC TGGATCATCC TGGGTGACGG CGCCTGTGGT TATGGTCTGG TGGAGTTCGA CACCTTTGTG CGTCACGGTA TCCCGGTGAT CGCGCTGGTT GGCAACGACG CCGGCTGGAC CCAGATTGCC CGCGAGCAGG TCAAGATGCT GCATGACGAC GTGGCCACCG TGCTGGCCCG CACCGACTAC CACGCGGTGG CGGCCGGCTT TGGCGCCGAA GGCATCGTGG TGAAAACCAT GATGGAGCTG CCCGCCGCCC TGGCCCGTGC CCGCGCGCTG GCGCACAGCG GCAAGCCGGT GCTGGTCAAC GTCTGGCTCG ACAAGACGGA GTTCCGGGAA GGGTCGCTGT CGATGTAG
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Protein sequence | MPSTSIRHGG DRVAEALQAH GVRCVFTLCG GHISPILSAS KARGIRILDV RDEATAVFAA DATARLSGLP GVAAVTAGPG ISNTITALKN AQLAQSPVIL IGGAAPTALQ GRGALQDIDQ RPLVAPHVKR FIKIQRVSEL GPAVDEAFAV AQAGVPGPVF IECPVDLLYD EVSIRQWYAD AAGKGTSVAD RLLRFYLNRH VKKMFDGSAA VSAPQVRPVL PPRAPDGRLQ AALAALAKAE RPLLVIGSQA LVLSKQAEHL AEAVARLGIP VYLSGMARGL LGRDHPLQMR HQRRQALREA DCVLLAGVPC DFRLDYGKHV RRSATLIAAN RSAKDARLNR KPDIAAIGDA GLFLQALAQA QPASTAAGSR LAAWVAQLRG RDAARELEID QQAQASGEFV NPIALFRTLE NELGDNALLV ADGGDFVATA SYVLHPRTPL SWLDPGAFGT LGVGAGFALG AALARPGGEV WIILGDGACG YGLVEFDTFV RHGIPVIALV GNDAGWTQIA REQVKMLHDD VATVLARTDY HAVAAGFGAE GIVVKTMMEL PAALARARAL AHSGKPVLVN VWLDKTEFRE GSLSM
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