| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2309 |
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| Symbol | |
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| ID | 3964111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2532598 |
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| End bp | 2533434 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637917126 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_523558 |
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| Protein GI | 89901087 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.107221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAATGA ATAATTCAGG ATGGATTCAA ATTGGCGAGC GCTTGTTCTG CGCTTGGTTG
CTTGCCACTG GCTTGGTCAG TATTTTAGGC TGCGCTTCAA AAGTGGCGGG TGTTGACCCA
ACAGGCAATG GGGTCGAGAT AATGACTGCT TCGGATGAGC CGGATGCCCG CAGGCGCGCT
CGTATTCGGC TGGAACTCGC GGTCGGCTAT TTTGAACAGG GCCAAACAAC AATCGCACTC
GATGAACTCA AGCAATCCAT CGCCGCGGAT CCGACTTTCG GTGAAGCCTA CAACTTGCGC
GGTCTGATTT ACATGCGGCT CAATGATTTC CGGTTTTCAG AGGAGAGTTT CAGGAAGGCG
CTGAGCATCA ATCCACAGAA TTCAAATATT GTGCATAACC TCGGTTGGTT GTTGTGTCAG
CAGGCGAGAT ACCCTGAATC GATGCTCATG TTCTCGCAGG CGCTTTCAAA CCCGCAATAT
GGGGGGCGCG CCAAGACCTT GATGGCGCAA GGCTTATGTC AGATCGGGGC CGGGCAGGCC
GCCGACGCCG AGATTAGCCT ATTGAAGTCC TATGAGTTTG ATGCAGGCAA CCCGGTCACG
GCTTATAACC TGGCCAAATT GCTGTTTCAG CGCGATGATT TTGTTCGTGC TCAATTCTAT
GTGCGACGTC TCAACAACAG TGAGTTGGCT AATGCGGAGT CACTGTGGCT CGGGGTCAAG
GTGGAGCGAC GTATGAACAA TCGAGACGCC ATGTTGCAGC TTGCCACTCA GCTACAGAAG
CGTTTTCCGC AGTCTCGTGA AGCGGCCTCC TATCAACGGA GTGCCTTTGA TGAATGA
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| Protein sequence | MSMNNSGWIQ IGERLFCAWL LATGLVSILG CASKVAGVDP TGNGVEIMTA SDEPDARRRA
RIRLELAVGY FEQGQTTIAL DELKQSIAAD PTFGEAYNLR GLIYMRLNDF RFSEESFRKA
LSINPQNSNI VHNLGWLLCQ QARYPESMLM FSQALSNPQY GGRAKTLMAQ GLCQIGAGQA
ADAEISLLKS YEFDAGNPVT AYNLAKLLFQ RDDFVRAQFY VRRLNNSELA NAESLWLGVK
VERRMNNRDA MLQLATQLQK RFPQSREAAS YQRSAFDE
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