| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2096 |
|---|
| Symbol | |
|---|
| ID | 3961262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2269888 |
|---|
| End bp | 2270967 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637916915 |
|---|
| Product | NlpBDapX lipoprotein |
|---|
| Protein accession | YP_523351 |
|---|
| Protein GI | 89900880 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3317] Uncharacterized lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0054161 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATCATT TTTCCAGACT CTCACTATTA AGCCTTTCAT TGGCGTTAGC AGCATGCACG
GTGCTTGATG GCGACAAAAT CAATTACAAA AGCGCCAGCA AAGGCACTTC GCTTGAAGTG
CCCCCAGACT TAACCCAACT GTCGCGCGAA ACCCGTTATG CGGTGCCTGG TGGTGCTGTG
TCGGCATCGA GTTTCCAGTT GGGTCAAGTG ACTCAAACGG TACCGACCGC AACCACCTCG
CTTGGAGATG TGCATATCGA ACGTTCGGGC AACCAGCGCT GGTTGGTGAT CAACCGTCCG
GCCGACAAAC TTTGGGAGCC GGTGCGCGAT TTCTGGCAAG AAAATGGTTT TCTGCTGGCC
ATCGATCAAG CCAACCTTGG CATCATGGAA ACTGACTGGG CCGAAAACCG GGCCAAAATT
CCACAAGACT TTATTCGCAA CACACTGGGT AAGGTAATTG ATTCCCTGTA TTCAACCGGC
GAACGCGACA AATTTCGCAC CCGGCTGGAA CGTAATGCAA GCGGTGGCAC CGATGTGTTC
ATCAGTCATC GAGGCATGAT TGAGGTGTAC AACAGTAGCG CTAAAGACAC CACCGTATGG
CAGCCCCGCG CCGCCGACCC AGAGCTTGAG GCGGAATTCT TGCGTCGGTT GATGGTCAAG
TTGGGGGTAA GCCAAGAGCA GTCCAAGGCA CTGTTGGCGG CGGGCGCCAG CCCGAGCAGT
TCCCGCGCGG CTGCGATCAA CGGACAACCC GTGGTCCAAA TCGACGATGG GTTCGACCGG
GCTTGGCGCC GTGTTGGCTT GTCGCTTGAC CGTACCGGAT TCACGGTCGA AGATCGCGAT
CGTGCACAGG GCGTCTACTT TGTCCGCTAC GTAGCCCCTA CGGCTGACAA GGCAGAACCA
GGCTTCCTGG GTAAACTCTT TGGCGCATCA AAAGCAGATG CGGCGCCATT GAAATACCGC
ATTACGGTCA TCAGCCAAGG AGCGTCAACG ACGGTTTCGG TGCTCGATGC TGGTGGAAAA
CCTGATACAT CCGCCAATGC ACAACGAATT GTGAATGTTA TCGCCGACGA CCTCAAGTAA
|
|---|
| Protein sequence | MNHFSRLSLL SLSLALAACT VLDGDKINYK SASKGTSLEV PPDLTQLSRE TRYAVPGGAV
SASSFQLGQV TQTVPTATTS LGDVHIERSG NQRWLVINRP ADKLWEPVRD FWQENGFLLA
IDQANLGIME TDWAENRAKI PQDFIRNTLG KVIDSLYSTG ERDKFRTRLE RNASGGTDVF
ISHRGMIEVY NSSAKDTTVW QPRAADPELE AEFLRRLMVK LGVSQEQSKA LLAAGASPSS
SRAAAINGQP VVQIDDGFDR AWRRVGLSLD RTGFTVEDRD RAQGVYFVRY VAPTADKAEP
GFLGKLFGAS KADAAPLKYR ITVISQGAST TVSVLDAGGK PDTSANAQRI VNVIADDLK
|
|---|
| |