| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2045 |
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| Symbol | |
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| ID | 3963183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2213121 |
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| End bp | 2214308 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916865 |
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| Product | twitching motility protein |
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| Protein accession | YP_523301 |
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| Protein GI | 89900830 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.398089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACCA GCGCACCAAA CGCAACACCG GGCACCTCCG GCACCATGGA GCGAATTCTT
CGCCTGATGA GCGAGAAAAA AGCGTCCGAC GTTTATTTGT CCTCCAACTC GCCAGCCCTG
ATCCGCATCA ACGGCCAATG CGTCCCGATC AACAGCCAGA TGCTGCCGCC CGAGGCGCCA
CGCAATTTGC TGGCCGAAAT ACTGCCACCC AACCGCCTCG AAGAACTCGA AGAGTTGAAT
GAGCTCAACA TCGGTTGGTC GCTGGCGGGC GTCGGCCGCT TTCGCATCAG CGCGATGCGC
CAGCGCGGCT CCATCGCGGC GGTGATCCGC TATATCTCGG TCGACATCCC AGCGCTTGAT
ACGCTGGGTG TGCCCCTGAT TCTGGGCCAG TTGATCATGG AAAAGCGTGG CCTGCTGCTG
ATGGTGGGCG CCACCGGTGC CGGTAAAAGC ACCACCATGG CCTCCATCAT TGACCACCGC
AACGCCAACG CCACCGGCCA TATCCTGACG ATTGAAGACC CGATGGAGTT CTTGTTCAAA
AACAAGCGCT CGGTGGTCAA CCAGCGTGAG GTTGGCACCG ACACCCAGTC GACCCATATC
GCCCTGAAGA ACGCTTTGCG CCAGGCCCCC GACGTGATCA TGATTGGCGA AATCCGCGAC
CGTGAGACCA TGTCGGCGGC CATTGCCTAC GCCCAGACCG GTCATTTGTG CCTGGCCACC
CTGCACGCCA ACAACAGCTA CCAGGCGCTC AACCGGATCC TGAGTTTTTA CCCGGTCGAA
GTGCGCCAGA CCATGCTGGG CGATCTGTCC GCCTCGCTCA AGGCGATTGT GTCGCAGCGT
CTGCTTCGCA CCACAGCCGG CGGACGCATC CCGGCGGTGG AAATCATGCT CAACACCAAT
CTGGTGGCCG AAATGATTGA AAAAGGCGAT TTCTCCGGCG TCAAGGACGC CATGGAAAAG
TCGATGGCCG AAGGTGGCCA GACCTTCGAG CAAGACATCG CACGCTTGAT CCTGGAAGGC
GTGGTGGACC GCAAAGAAGG TCTGCTCAAC TCGGATTCAC CGACCAATTT GATGTGGCGC
CTGCAAAACG ACTTCAACGC CCGGACACAA GCGTCCGAGC CCGCCGAAGA CCCGGATGAT
CAACCCTCCT TCACCGAAAT CACGTTCGAC GTGAAACACG GGTCGTGA
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| Protein sequence | MATSAPNATP GTSGTMERIL RLMSEKKASD VYLSSNSPAL IRINGQCVPI NSQMLPPEAP
RNLLAEILPP NRLEELEELN ELNIGWSLAG VGRFRISAMR QRGSIAAVIR YISVDIPALD
TLGVPLILGQ LIMEKRGLLL MVGATGAGKS TTMASIIDHR NANATGHILT IEDPMEFLFK
NKRSVVNQRE VGTDTQSTHI ALKNALRQAP DVIMIGEIRD RETMSAAIAY AQTGHLCLAT
LHANNSYQAL NRILSFYPVE VRQTMLGDLS ASLKAIVSQR LLRTTAGGRI PAVEIMLNTN
LVAEMIEKGD FSGVKDAMEK SMAEGGQTFE QDIARLILEG VVDRKEGLLN SDSPTNLMWR
LQNDFNARTQ ASEPAEDPDD QPSFTEITFD VKHGS
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