| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1940 |
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| Symbol | |
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| ID | 3964122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2082188 |
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| End bp | 2083375 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916760 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_523197 |
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| Protein GI | 89900726 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.345824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA AAGTATGGAT TGGGATCGTT GGCTTGCTGG TGCTGGCGCT CTTGGGGTGG
GCCTTCATGC CGACCCCGGC AGAAGTCGAG ATAGCGGCCG TGACCCAGGG ACGGTTTGAA
CGTTCTGTGC AGGAGGACGG CAAGACCCGC CTGCGCGACC GCTATGTCGT CTCGGCGCCG
CTGGCGGGTC GCGTGGCGCG CATCCTCCTC AAACAAGGCG ATACGGTGAT GCGCGACGCC
CCCGTCGCGA CATTCTGGCC CGTGGCCCCG GCACTGCTTG ATGAGCGCAC CCGCGCCGAG
CAAAGTGCAC GCATTGGTGC GATGCAGGCC TCGGTAGCAC GGGCACAGGC CAACGTCGGG
CGAGCCGGCG CGGCGCTTGA CCAGGCGCAG GCGGAACTCA AACGCAGCGA AGCGCTTGCC
CAACAGGGTT TTGTTTCACC CAACCAGAAT GAAACCGGGC GACTTGCCGT GCGCCTGCGC
GAGAAAGAGC TGGAAAGCGC GCGGCAAGAA GAGGCCGCCG CGCGCCATGA GTTGGAACAG
TCACGCGTTG CCTTGCGCCA GTTCTCCCAG ATCACGCCGG GTGGGCGGCA ACGTGCCTAT
GACGTCAAGG CGCCCGTCTC AGGCAAGGTT CTGAAGGTGC AGCAGCAAAG TGAAGGCATC
GTGATGGCTG GCACACCGAT CATGGAACTG GGCGACCCGA CCCAGCTTGA AGTGGTGGTG
GATATCCTGA CCGAAGATGC CGCGCAGATC AAGCCGGGCA CCGCGGTGCA GCTCTCAAAC
TGGGGTGGAC CCGACGTGCT GACAGGACAA GTTCGGCTCA TCGAACCGGC GGCATTCACC
AAAGTCTCGG CTTTGGGGGT GGAAGAACAG CGCGTCAATG CGATTATCGA CATCACCTCG
CCTCCCGAAA AATGGCAGGC ATTGGGCGAC GGGTTCAAGG TGGATGTGCG TGTGCTGGTC
CAAGTCGTGG AAAACGCGGT CATGATTCCG GTCAGCGCCT TGTTTCCGGT TGGTGCCCGC
TCAGGCCTTT TTGTGCTGGA CAAGGGCCAT GCTCGCCTGA AAGAGATTGA AGTGGCAGCA
CGCAACGGTG CCCTGGCCTG GGTCAAGACG GGGCTGACCA AGGATACTCA GGTGATCGTC
TACCCGGACA CCAAGCTCAA AGACGGCGAC CGGGTCAAGA CGCGTTGA
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| Protein sequence | MKRKVWIGIV GLLVLALLGW AFMPTPAEVE IAAVTQGRFE RSVQEDGKTR LRDRYVVSAP
LAGRVARILL KQGDTVMRDA PVATFWPVAP ALLDERTRAE QSARIGAMQA SVARAQANVG
RAGAALDQAQ AELKRSEALA QQGFVSPNQN ETGRLAVRLR EKELESARQE EAAARHELEQ
SRVALRQFSQ ITPGGRQRAY DVKAPVSGKV LKVQQQSEGI VMAGTPIMEL GDPTQLEVVV
DILTEDAAQI KPGTAVQLSN WGGPDVLTGQ VRLIEPAAFT KVSALGVEEQ RVNAIIDITS
PPEKWQALGD GFKVDVRVLV QVVENAVMIP VSALFPVGAR SGLFVLDKGH ARLKEIEVAA
RNGALAWVKT GLTKDTQVIV YPDTKLKDGD RVKTR
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