Gene Rfer_1534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1534 
Symbol 
ID3960688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand- 
Start bp1651212 
End bp1651865 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content66% 
IMG OID637916353 
ProductABC transporter related 
Protein accessionYP_522797 
Protein GI89900326 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.598778 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCTGG TGGTCTCCAA TTTAAGCAAG CACTACGGCG CGGTGCCGGT ATTTGCCAAT 
GTGTCCTTGA GCGTGCCCGA CGGCGAGTTT GTGGCGATCG TGGGGGAGTC CGGCGTTGGC 
AAGTCCACCC TGCTCAACTG TCTGGCCGGG CTGGACCAGT GGGACAGCGG CTCGGTCGTT 
CTCGATGGCC TTGATCTGGG GCAGTTGAAC GACGACCAGC TGGCGCGCCT GCGGCGTGAA 
AAAATCGGTT TTGTATTCCA GGCCTTTCAC GTGCTGCCGC ACCTGGATGT GGCGCAAAAC 
GTGGCGCTGC CCTTGATGCT GCTGGGCCAG CACGATGATG CCCGGGTGCA GGCCATGCTG 
GCAGCGGTGG GCCTGGGCGG CCTGGGCGCG CGCCTGCCGC AGCAGCTCAG TGGCGGCCAG 
TTGCAGCGCG TGGCCATTGC CCGCGCCCTG GTGCACCGGC CAAAACTGCT GCTGGCCGAC 
GAGCCCACCG GCAACCTGGA CCCCAGCACG GCCGCAAAAG TGATGGACGC CCTGATTGAG 
CAGGCCCGCC AACAACACGC CTCGCTGGTG CTGGTCACCC ATTCACAAGC CGCCGCCACC 
CGCGCCGACC GGGTGCTGCG GCTCGCTGCG GATGGTCTGT TCACGCCCGG CTGA
 
Protein sequence
MSLVVSNLSK HYGAVPVFAN VSLSVPDGEF VAIVGESGVG KSTLLNCLAG LDQWDSGSVV 
LDGLDLGQLN DDQLARLRRE KIGFVFQAFH VLPHLDVAQN VALPLMLLGQ HDDARVQAML 
AAVGLGGLGA RLPQQLSGGQ LQRVAIARAL VHRPKLLLAD EPTGNLDPST AAKVMDALIE 
QARQQHASLV LVTHSQAAAT RADRVLRLAA DGLFTPG