Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1240 |
Symbol | |
ID | 3961230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 1335167 |
End bp | 1336648 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637916054 |
Product | polysaccharide biosynthesis protein |
Protein accession | YP_522505 |
Protein GI | 89900034 |
COG category | [R] General function prediction only |
COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.554345 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACGTTA ATCCAGAATC ATCGGTCAGC TCGAAAATAA AAGAGGCTGG TCGCCATTCC ATTGTGTATG GTTTGGGCAG TGTTGCCCAA TCGGCGGTCG GTTTCGTATT GCTGCCAATT TTGACGGGTG CTTTAACCAA AGAAGATTTT GGGGTTTATT CCTTGATCTT GATGGCCAGT GCAGTAGCTG GTGCCATTTT CTATCTGGGC ATGACCTCAG CTCTGCCAAG ATCATATTTT GACTATCAGT CTGCAGATGA TCGACGAGCA GTGTTCACAA CCGCTTTTGT TATTTTGCTG GGTGGTGCAT TAATTCAAAG CGGAGTCGGT TATTTTGGCG GACAACTCAT TTCAAAAGCC TTGGTGGGTC GTAACAATTA TTCAATACCA ATAGCTTGGG CTTTTTTGGG GAGTGCTATT GGATTTGTCA ATCAATATTT TTTTAGTTAC CTCAGAATTT TGCGCAAATC AACAGCTTCT GTCATATTCA GTTTAATCGG CTTGCCTGGT GGAATTGGTC TGACGCTATG GTTACTTGCA CGTTCGCCGG GTGACTTGGC CGCGCCTTTT GAGGCTCTTG CCTGGTCACA GCTTGCCATT ATGCTCATAT TCATTGGCTT TTTCGGCAAA GAAGCCTTCA CGTTTCGCAT TCAAAAAGAG GAACTGTCCC GGCTTATCCC GTTTGGCGTT GGCTCTGTTG TTGCTAGTTT TGGCGGTATT TTGCTGGATT GGGCTGATCG ATTGATTATT GAACATTTTT TGACCCTTGC TGACGTGGGC AGCTATTCAG CCGCTTTTCG AATTGGTACG CTCATTAATA TCATACTTAT TTCGCCATTC AGCCAAATCT GGTCACCCAT GATGATGGAA TACCGTACTC ATGACAATAT CAAAGAACTA TTCACCAAAG TTTTTTATTA TTTTATGATG ATTGGCACGG TGACACTGGC TGGAGCTTCA CTTTTTATGG GCGATATTTT GCCATTATTG ATACGGTCAG AAATAAGTCA TCAAATGATC AGCGTGATAT TGCTGGTCAT GCTCGGAACA CTGATCTATG GCTGCACCAA TATTGTAGCG GCAGGGTTAT TGTACGAGCG CAAGGTTGCT CAAGTATCTT ATGTTTACTA TACTGTTGCC GGTATTAAAA TTGGGGTCAA TTTACTGATT ATTCCAGTTT TTGGCATAGT CGGGGCTGCT GTTACCACCT TGCTTGCAAG CGTTATGATA CCTACGGGTA TTTATGCATT GGCACGCAAG TACTTTTCAT TTATTATTGA TTGGAAAAGA TTGGCGTTGT TGGGATTTAA TTTGTTACTA CCGCTGGTGT ATGGATTATT TTATTTTTCA GAATACCCGA TTGCATTGCC GCTTCGAATC ATCTGGTTTT TTGTATTCTG TATATTGATT TATTTCACAT GCTTCTCAAG TGATGAAAAA GTTCAGTTGA AAAATGTAGT TCTCCAATTT GTACCCAGTT AG
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Protein sequence | MNVNPESSVS SKIKEAGRHS IVYGLGSVAQ SAVGFVLLPI LTGALTKEDF GVYSLILMAS AVAGAIFYLG MTSALPRSYF DYQSADDRRA VFTTAFVILL GGALIQSGVG YFGGQLISKA LVGRNNYSIP IAWAFLGSAI GFVNQYFFSY LRILRKSTAS VIFSLIGLPG GIGLTLWLLA RSPGDLAAPF EALAWSQLAI MLIFIGFFGK EAFTFRIQKE ELSRLIPFGV GSVVASFGGI LLDWADRLII EHFLTLADVG SYSAAFRIGT LINIILISPF SQIWSPMMME YRTHDNIKEL FTKVFYYFMM IGTVTLAGAS LFMGDILPLL IRSEISHQMI SVILLVMLGT LIYGCTNIVA AGLLYERKVA QVSYVYYTVA GIKIGVNLLI IPVFGIVGAA VTTLLASVMI PTGIYALARK YFSFIIDWKR LALLGFNLLL PLVYGLFYFS EYPIALPLRI IWFFVFCILI YFTCFSSDEK VQLKNVVLQF VPS
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