| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0951 |
|---|
| Symbol | |
|---|
| ID | 3963589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 999624 |
|---|
| End bp | 1000772 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637915776 |
|---|
| Product | galactonate dehydratase |
|---|
| Protein accession | YP_522227 |
|---|
| Protein GI | 89899756 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA CCAAACTTAC CACTTACATC GTGCCCCCGC GCTGGTGTTT TCTGAAAATT
GAAACTGATG AAGGTGTGGT CGGCTGGGGC GAGCCGGTAG TTGAAGGCCG GGCGCACAGC
GTTGCGGCTG CCGTTGAAGA GTTATCCGAC TATCTAATCG GCAAGGACCC GCGCAATATC
GAAGATCACT GGACCGTGTT GTATCGCGGA GGCTTTTATC GCGGCGGCGC AATCCACATG
AGCGCGCTTG CCGGGATCGA TCAGGCGCTA TGGGATATCA AGGGCAAAGC ACTCGGAGTC
TCGGTGAGCC AGCTGTTGGG CGGCCCGGTG CGCAACAGTA TCCGCGTCTA CTCTTGGATT
GGTGGCGACC GCCCGGCCGA TGTGGCAGCA GCCGCCAAAG ATGCTGTGGC GCGCGGGTTT
ACTGCGGTCA AGATGAACGG AACGGAAGAA TTGCAGTTCG TCGATTCGTA TGAAAAAGTT
GAAGCGGCCT TGGCCAATGT GGCGGCGGTG CGCGACGCAG TCGGTCTCCA CGTCGGCATC
GGCGTCGACT TTCACGGTCG GGTCCATAAG CCGATGGCCA AAGTCCTGAT CAAGGAGCTG
GATCAATACA AGCTGATGTT TATCGAAGAG CCAGTACTCA GTGAAAACTA CGAGGCATTA
AAGGAACTGG CGCCGTTGAC CAACACCCCA ATCGCTCTCG GTGAGCGACT CTATTCGCGC
TGGGATTTCA AACGAATTCT CAGCGACGGC TATATCGACG TCATCCAGCC GGATGTCTCG
CATGCCGGCG GTATCACGGA AACCCGCAAG ATTGCCACCA TGGCCGAAGC CTACGACGTC
GCAGTTGCGC TGCACTGCCC GCTCGGCCCG ATAGCGCTGG CCGCGTGTCT GCAAGTCGAT
GCCGTGTCGT ACAACGCCTT CATCCAAGAG CAAAGCCTGG GCATCCACTA CAACCAAAGC
AATGACTTGC TGGACTATCT GACACAGCCG GAAGTCTTTG CCTACGATAA AGGCTATGTG
ACGATCCCGC AAGGTCCGGG ATTGGGGATT GAAATCAATG AAGAATACGT CAAGGAGCGC
GCCGCTATCG GCCACCGCTG GCGCAACCCA ATCTGGCGCC ATAGGGATGG CAGCTTCGCC
GAATGGTAG
|
|---|
| Protein sequence | MKITKLTTYI VPPRWCFLKI ETDEGVVGWG EPVVEGRAHS VAAAVEELSD YLIGKDPRNI
EDHWTVLYRG GFYRGGAIHM SALAGIDQAL WDIKGKALGV SVSQLLGGPV RNSIRVYSWI
GGDRPADVAA AAKDAVARGF TAVKMNGTEE LQFVDSYEKV EAALANVAAV RDAVGLHVGI
GVDFHGRVHK PMAKVLIKEL DQYKLMFIEE PVLSENYEAL KELAPLTNTP IALGERLYSR
WDFKRILSDG YIDVIQPDVS HAGGITETRK IATMAEAYDV AVALHCPLGP IALAACLQVD
AVSYNAFIQE QSLGIHYNQS NDLLDYLTQP EVFAYDKGYV TIPQGPGLGI EINEEYVKER
AAIGHRWRNP IWRHRDGSFA EW
|
|---|
| |