Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0785 |
Symbol | |
ID | 3964203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 823326 |
End bp | 825605 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637915615 |
Product | putative spermidine synthase |
Protein accession | YP_522066 |
Protein GI | 89899595 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACGA CCACGGTCCC GCTGTCCCGC GAGCCGGCAA GCAGCGCATC AGTGCCGAAC CGGCAGGTTC GTGTCCTGTG TGTTCTGTTC TTTTTCTCCG GCTTCCCGGC GCTCATTTAT CAACTGGTAT GGCAACGCGC CTTATTCCGC ATCTTCGGTG TCAACATCGA ATCGGTGACG ATCGTCGTCA CCGCATTCAT GCTCGGCCTG GGCCTGGGCG GCTTGGCCGG CGGCTGGTTG TCGAAACGTC GAGGCATACC GCTACTGTTG TTGCTCGCGA CCATCGAAAC ATTGACCGGC GTGTTCGGGC TGTTCTCTCT GTCGATATTC GAGCGAGTCG GCGACATCGT CCTCGGTGCG CCATTGCCCC TGACTGCACT GGTGACCTTG GCTTTGGTCA TTGTGCCGAC GCTGTTGATG GGCGCCACGC TGCCGCTGCT CGTTGGCCAC CTCGTGCGGC GTTCCGGCAA CGTCGGCGCC TCGGTCGGCC AACTCTATTA CGTCAACACC CTGGGTGCGG GCGCTGCCTG CCTCGCCTGT GCGGTCCTGT TGTTCCCGCT GCTCGGCATG CAGGGTTCGG TGCTGGTGGC CGTGGCATTC AACGCGGCTG TCGCGCTGGG GGCCGTCGCT GCGCATACAG CCGATCGGCG CAATATGCCC CACACCCTAA CCGACTCCAA TCCGACCCGA TCAACAGCCG CGTCTCGCAC CAGCCTCCCA TTTGCGGTCG TGCTCGCGAT GTCGTGTGTG GGCGGTCTGG TGTCGCTGTC GTACGAGATC TTCTTTTTCC GCGCAATGTC CTACGCCAGC GGGAGCAGTT CTTTCGCGTT TGCGACGACC CTCGGTGCCT TTCTGGTCGG CCTGGCGTCT GGTGCCCGGC TCGGCGGCGA AGCTTGCAAC GACGTGGACG GTGACGTGCT GTTGCACCGA ATGCTGCGCA GCCTGCTCGC GGCCAGTCTG ATCGGGTTTG CGTTTCTACC CGTGCTCGGC CACCTCGCCT GGCTGGACCG CGCGATCCTC GGCGTGGGCC TGTTGTTTGT GTACCTGTTG GCACGTCAAT GGGGCCTGGT ACTGCCCTGC CTTGCCCACC TCGGCGTGGC CGCTGACGCG CAGGCCGGCA TGAGAACAGG GTTGCTTTAC CTTGCGAACA TTCTCGGCGC CGCGACGGGT TCGGTGCTGA CCGGTTTTAT CTTGATGGAC CACCTGAGCC TGGTCCAGGT GGGCCAACTG CTGGTCGCCG CAGCATTCGG ATGCGCGCTG ATTCTTGGCC TGGCGATCAC GGCGTCTCGG GGTATCAAAT TCAGACGTTC GAGCGCCATC GCAGTGGTCG CAGGCTTGGC CGTTCTGGCG CTGCCCGCAG CCAGCGAAAA AGTCCTGGAA TCGCTTCAGT GGAAGGGCGC ACCCGAGAGC AAGACGCCAT TCGCGGCGGT TGTTGAGAAC CGCAGCGGAA TCGTCACCGT TGATCGCACG GGCACAGTCT TCGGCAACGG CGCCTACGAC GGGCACTTCA ACGTCGAACT GACCTACGAC GTAAACGGCA TCGTACGCCC GTACGCGCTC AGCCTGTTTC ATGCCGCCCC GCGCGATGTG CTGATGATCG GCCTGGCTTC AGGCTCTTGG GCGCAGGTAT TGACCAACAA CCCCGAGGTG GATTCGCTCA CGATTGTCGA GATCAATCCT GGCTATGTCG GCCTGATCGC CGCCAACCCG AGTGTCAGGT CAGTGCTCAC CCATCCTAAA GTCACGCTGG TGACGGACGA CGGCCGCCGC TGGCTGCGAA TGAATGCGCA TCGGCACTTT GATGCGATTG TGGCCAACAC AACCTATCAC TTCCGTTCCA ATGCGACGAA CCTGCTGTCC GTCGACTTCC TCACATTGGT CAAGGCGCAT CTGAACCCGG GTGGCATCCT GTTCTACAAC ACGACGGACT CAAGTCGCGT TCAGCGCACA GGCTGTACAA GCTTCGCGCA CGGAGCACGT TTCACGAACC ACCTGGTCCT GTCAATGACA CCTATCGACT GGAACTTTGC GCGCTGGCGC CGCACGCTGG AGGCCTACCG CATTGATGGT CGACCGATGC TCAACCCGGC GCGCGCCGAG CACGCGCAAG GTCTGGCGCG ACTAATGGCA CTGGAGAGCC AGACGCACCC CGATGGCGCG CACGCAGCCG GCGAATGGAT CGAACACTGC GCGCAGGTTT TGGCGCGCAC GGCTGGCCAG GACCTCGTCA CCGACGACAA CATGGGTACC GAATGGCGCC ACGTCTGGGA GAAACAATGA
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Protein sequence | MNTTTVPLSR EPASSASVPN RQVRVLCVLF FFSGFPALIY QLVWQRALFR IFGVNIESVT IVVTAFMLGL GLGGLAGGWL SKRRGIPLLL LLATIETLTG VFGLFSLSIF ERVGDIVLGA PLPLTALVTL ALVIVPTLLM GATLPLLVGH LVRRSGNVGA SVGQLYYVNT LGAGAACLAC AVLLFPLLGM QGSVLVAVAF NAAVALGAVA AHTADRRNMP HTLTDSNPTR STAASRTSLP FAVVLAMSCV GGLVSLSYEI FFFRAMSYAS GSSSFAFATT LGAFLVGLAS GARLGGEACN DVDGDVLLHR MLRSLLAASL IGFAFLPVLG HLAWLDRAIL GVGLLFVYLL ARQWGLVLPC LAHLGVAADA QAGMRTGLLY LANILGAATG SVLTGFILMD HLSLVQVGQL LVAAAFGCAL ILGLAITASR GIKFRRSSAI AVVAGLAVLA LPAASEKVLE SLQWKGAPES KTPFAAVVEN RSGIVTVDRT GTVFGNGAYD GHFNVELTYD VNGIVRPYAL SLFHAAPRDV LMIGLASGSW AQVLTNNPEV DSLTIVEINP GYVGLIAANP SVRSVLTHPK VTLVTDDGRR WLRMNAHRHF DAIVANTTYH FRSNATNLLS VDFLTLVKAH LNPGGILFYN TTDSSRVQRT GCTSFAHGAR FTNHLVLSMT PIDWNFARWR RTLEAYRIDG RPMLNPARAE HAQGLARLMA LESQTHPDGA HAAGEWIEHC AQVLARTAGQ DLVTDDNMGT EWRHVWEKQ
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