Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0352 |
Symbol | |
ID | 3962479 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 352870 |
End bp | 354039 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637915184 |
Product | extracellular solute-binding protein |
Protein accession | YP_521637 |
Protein GI | 89899166 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000218396 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAAA AGTATCTATG GTCATTTGCG CTGTCTGCGC TGGTGTTGGC TGCTTGCGGA AAGAAAGAGG AGCCACCTGC GCCCGTGGCG GTACCCGCTA CGGTGGTGAG CGCGCCCGCA CCGGTGGCGC AGAACAGCGA AGAAAAAGTC CTCAACATCT ACAACTGGCC TGACTACATC CCTGAGGGCA TGATGGCTGC TTTCGAGAAA GAGAGCGGAA TCAAGGTCAA TTACGACACC TTCGAGACCA ACGAAGCGCT GCATGCCAAG CTGGTGGCGG GCAACACCGG TTATGACATC GTGGTGCCCG GCTCGGTGTT TGCCAAACCA CAGATCGAAG GCGGCATGTT CCAGCCCCTG GACAAGGCCA AGATCAAGAA CCTGGGCAAC CTGGACTCAA ACATCATGGC CACGCTGGCT AAAAACACCG ACCCCGGCAA CAAGTACCTG GTCCCCTGGG CCTGGGGCTT TACCACCGTG GGCATCAACA AGACCAAGGT CGCCAAGGCG CTGGGCAAAA CACCCATGCC TGAAAACGCC TGGGACCTGG TGTTCAAGCC CGAATACACC AGCAAGTTGA AATCCTGCGG TATTGCCTAC CTGGATTCGC CTACCGAAAT CATCCCGGCG GCGTTGCACT ACATCGGCAA GGATGCGTAT TCGAACGATC CGGCCGATTA CAAGCTCGCG AATGAGATGT TGGCCAAGGT GCGCAAAGAT GTGCGCATTT TCAGCTCGAC CATGATCGAC GACATTGCTG GCGGCAAAGC CTGCGTGGCC ATTGGGTGGT CGGGCGACAT CAACATCGCG GCAAATCGCG CCAAAGAAAA CAAGTCCAAA GACGTCATCG AGTCGCTGTT GCCCAGCACC GGTGCACTGA TTTTCTTTGA CACCATGGCC ATCACCAAAG ATGCCAAGCA CCCCAACAAC GCGCTGGCCT TCATCGACTT CTATCTGCGT CCTGAAAACG CCGCTCGCAT GGCCAACGAA ATGAACTACC CGACGGCGAA CAAGGCAGCG ATGGACAAAA TCAAGCCTGA AATTGCTGGC AACAAGACCA TTTTTGTTGA GTCAGACTAC TTTGCCAAGA TGATTGCCCC GAGCAGCTTC ACCAATGAAG CACGCGAGGC CATGGCCACG GTCTACAACA GCTTCAAAAA GGGCAAGTAA
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Protein sequence | MMKKYLWSFA LSALVLAACG KKEEPPAPVA VPATVVSAPA PVAQNSEEKV LNIYNWPDYI PEGMMAAFEK ESGIKVNYDT FETNEALHAK LVAGNTGYDI VVPGSVFAKP QIEGGMFQPL DKAKIKNLGN LDSNIMATLA KNTDPGNKYL VPWAWGFTTV GINKTKVAKA LGKTPMPENA WDLVFKPEYT SKLKSCGIAY LDSPTEIIPA ALHYIGKDAY SNDPADYKLA NEMLAKVRKD VRIFSSTMID DIAGGKACVA IGWSGDINIA ANRAKENKSK DVIESLLPST GALIFFDTMA ITKDAKHPNN ALAFIDFYLR PENAARMANE MNYPTANKAA MDKIKPEIAG NKTIFVESDY FAKMIAPSSF TNEAREAMAT VYNSFKKGK
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