| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0028 |
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| Symbol | |
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| ID | 3960457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 29673 |
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| End bp | 32813 |
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| Gene Length | 3141 bp |
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| Protein Length | 1046 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637914867 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_521321 |
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| Protein GI | 89898850 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.77996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGAAT CCGACCTCGA GCAACTCGCC CTCACTTGGT TTCAGGACAC CGGCTGGGAC
TACCGCGCTG GCCCCGACAT TGCACCTGAC AGCGACAGCC CCCAGCGCAG CGACTACCGC
CAAATGCTGC TGCAAGGCGA GCTGCGCGAG GCGCTCTCAA GGCTGAACCC GCAAGTCCCC
GCCGCTGTGC TGGACGATGT GGCGCACCAG TTGAGCAAGC CAGACCACCC TTCGCTCATC
CAAAGCAACC GTGCGTTCCA CGAAGCGCTT GTGGGCGGTG TACCGGTAGA GGTGGAAGTG
AACGGCGAGC GCCGGGGCGA CCGCGTGGTG TTGGTGGACT TTGACACGCC CGAGCGCAAC
CGCTTCTTGG TGGTGAACCA GTTCACCGTG CAAGGCAGCA AGCAGCCGCG CCGGCCCGAC
CTGGTGTGTT TCATCAACGG CCTGCCCATT GCGGTGATAG AGCTGAAAAA TTTGGCTGCG
GAGCAGGTGG GTGTGCAAGA TGCCTTCCAC CAGTTGCAGA CCTACAAAGA CGAGCTGGCC
GACCTGTTTG TAACCAACGA GGCCTTGGTG GCTTCCGACG GTTTGCATGC GCGCATAGGC
TCGCTCACCG CCAGCTTTGA GCGCTTTTTG CCCTGGCGCA CGGTCAAGAA CGAGAACGAC
CGCCCGCTGC TGGAGTTTGA GCTGGAAAAA GTGGTGCGCG GCTTCTTTGC GCCCGCGCTC
TTACTGGACT ACCTGCGCTA CTTCGTGCTG TTTGAGATGG CCGACGGCCA GGTAGTGAAA
AAGATTGCTG CCTATCACCA GTTTCACGCG GTGCGTGCGG CGGTCAAGGC GGCGGTGATT
GCCGCCACGC CACCCGCCAC CAACGCGGCG CAAGAGCAAT GGGCCAGCTA TGCCGAGCGG
GTGAAGCCCG GCTCGCGCAT GGGTGGCATT GTGTGGCACA CGCAGGGCTC GGGCAAAAGC
ATTTCCATGG TGTGCTTTGC CGCCAAGCTG ATGCAACAGC CAGAAATGCA CAACCCCACG
CTGGTGGTGG TGACGGACCG CAACGATCTG GACGGCCAGT TGTTCCAGAC CTTTGTGGGT
GCACGCAGCC TGCTGCGCGA GCAGCCGCAG CAAGCGGGCA GCCGCGACGA ACTGCGCGCG
TTGCTGGCCG GGCGGCCATC GGGCGGCATC ATCTTCACCA CGGTGCAGAA GTTCACGCCC
GATGCTGGGG AAGAAGTGTT CCCGCTGCTG AGTGAACGCA ACAATATCGT GGTGATGGCC
GACGAAGCGC ACCGCTCGCA ATACGGCTTT CGCGCGGTGC TGGACAAGAA GACCGGCAAA
TACAAATACG GCTTTGCCAA GCACCTGCGT GATGCGCTCA AGAACGCCAC CTTCGTCGGC
TTTACCGGCA CGCCCATTGA GGCGGGCGAC CACGACACCC GCGCCGTGTT TGGCGAGTAC
GTCAGCATTT ATGACATTCA AGACGCGGTG GACGATGGCG CCACAGTGCC GATCTTCTAC
GAGAGCCGCC TGGCCAAGCT GAACTTGAAC CAGGTGGAGA TGGAGAAGCT GAACGCAGAT
GTGGAAGATG TCTTTGAAGA CGAAGAAGAC GCAGCGCTGA TAGAGGCCGA GAAAACCCGT
TGGGCGGCGT TGGAAAAACT GGTGGGTGCC AAGGAGCGCG TGGACCTGGT GGCGGCAGAC
ATCGTGCAGC ACTTTGAGGC GCGCAATACG GCGGTGGCGG GCAAGGGCAT GGTGGTGGCC
ATGAGCCGCG AGATTTGCGC TCGACTTTAC GCAGCCATCA TCAAGCTGCG CCCCGACTGG
CACAGCGACG ACCCCGCACA GGGGGCTATC AAGGTGGTGA TGACCGGCTC TGCAGCAGAC
GCTACGCTGT TGCAGCCGCA CATCTACAAC AGCGCTGCCA AGAAGCTGCT GGAGCGCCGC
TTCAAAGACG CAACGGACCC GCTGAAGCTG GTGATCGTGC GCGACATGTG GCTCACCGGT
TTTGACGTGC CCTGCCTGCA CACCATGTAC ATCGACAAGC CGATGCGCGA CCACAACCTA
ATGCAGGCCA TTGCCCGCGT GAACCGCGTG TTTCGCGACA AAGAGGGCGG CCTGGTGGTG
GACTACATCG GCATTGCCGC CGAGCTGCGC AAGGCGCTAC GCACCTACAC CGAGAGCAAG
GGCAAGGGCC AGCCCACGCT GGATGCCACC GAGGCACTTG CCAAGTTGCA AGAGCTGATG
GAGGTGGCGC GCCACCTGCT GCACGGTTTT GATTTCAGCG CCTACCGCAC CCAGGCCACC
ACGCTGCTGC TGCCTGCCGC CAACTTTGTG CTGGGACTGG ACGACGGCAA GAAGCGCTGG
GCCGATGTGG TGCTGGCCAT CACCAAGGCG TTTTCGCTGT GCGGCACGCT GGACGATGCG
GCGCTGCTGC GCGAGGAGAT TGCGTTCTTC CAGGCTATCA AGGCGGTGAT TGCCAAGGCC
ACCACGTCGG ACGCCAAGCT GTCGGAAGAA GGCCGCAACG CGGTGCTCAA GCAGATTCTG
GACAACGCGG TGGTGGCCGA GGGGGTGGAA GACATCTTCA AGCTCGCCGG GCTGGAGCGG
CCCGACATTG GCATCCTGTC CGATGCTTTT TTGGAAGAAG TGCGCCAGCT ACCGCAACGC
AACTTTGCGG TGGAGTTGCT GCAAAAGTTG CTGAATGACC AGGTGAAGTC GCGCATGCGG
ACCAACGTGG TGATGGAGCG CAAGTTCAGC GAGCGCCTGC AGGCTGCGCT GAACCGCTAC
CTGAGCCGCG CCGTGGAGAG TGCGCAGGTG ATTGAAGAAT TGATTGCCAT GGCCAAGGAG
TTCCGCGAAG CCGCGCTGCG CGGTAATAAG CTGGGCCTCA ACACGTCGGA ACTGGCTTTT
TACGATGCGC TGACAGACAA CGAAAGCGCC GTGCGCGAGA TGGATGATGA GGTGCTAAAG
AAGATCGCGG TGGAGATCAC CGAGAAGCTG CGCAACAGCA CCTCGGTGGA CTGGCAAAAG
CGCGAGAGCG TGCGCGCCCG CCTGCGTAAC CTGGTGCGTA TCACCCTGCG CCGCTACAAG
TACCCGCCCG ATATGCAGGA AGAAGCCATC CGGCTGGTGT TGGAGCAAGC GGAGCGGCTG
TCAGACGCTT GGACAAAGTG A
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| Protein sequence | MVESDLEQLA LTWFQDTGWD YRAGPDIAPD SDSPQRSDYR QMLLQGELRE ALSRLNPQVP
AAVLDDVAHQ LSKPDHPSLI QSNRAFHEAL VGGVPVEVEV NGERRGDRVV LVDFDTPERN
RFLVVNQFTV QGSKQPRRPD LVCFINGLPI AVIELKNLAA EQVGVQDAFH QLQTYKDELA
DLFVTNEALV ASDGLHARIG SLTASFERFL PWRTVKNEND RPLLEFELEK VVRGFFAPAL
LLDYLRYFVL FEMADGQVVK KIAAYHQFHA VRAAVKAAVI AATPPATNAA QEQWASYAER
VKPGSRMGGI VWHTQGSGKS ISMVCFAAKL MQQPEMHNPT LVVVTDRNDL DGQLFQTFVG
ARSLLREQPQ QAGSRDELRA LLAGRPSGGI IFTTVQKFTP DAGEEVFPLL SERNNIVVMA
DEAHRSQYGF RAVLDKKTGK YKYGFAKHLR DALKNATFVG FTGTPIEAGD HDTRAVFGEY
VSIYDIQDAV DDGATVPIFY ESRLAKLNLN QVEMEKLNAD VEDVFEDEED AALIEAEKTR
WAALEKLVGA KERVDLVAAD IVQHFEARNT AVAGKGMVVA MSREICARLY AAIIKLRPDW
HSDDPAQGAI KVVMTGSAAD ATLLQPHIYN SAAKKLLERR FKDATDPLKL VIVRDMWLTG
FDVPCLHTMY IDKPMRDHNL MQAIARVNRV FRDKEGGLVV DYIGIAAELR KALRTYTESK
GKGQPTLDAT EALAKLQELM EVARHLLHGF DFSAYRTQAT TLLLPAANFV LGLDDGKKRW
ADVVLAITKA FSLCGTLDDA ALLREEIAFF QAIKAVIAKA TTSDAKLSEE GRNAVLKQIL
DNAVVAEGVE DIFKLAGLER PDIGILSDAF LEEVRQLPQR NFAVELLQKL LNDQVKSRMR
TNVVMERKFS ERLQAALNRY LSRAVESAQV IEELIAMAKE FREAALRGNK LGLNTSELAF
YDALTDNESA VREMDDEVLK KIAVEITEKL RNSTSVDWQK RESVRARLRN LVRITLRRYK
YPPDMQEEAI RLVLEQAERL SDAWTK
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