| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4240 |
|---|
| Symbol | |
|---|
| ID | 5541751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5478708 |
|---|
| End bp | 5479694 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640896347 |
|---|
| Product | CRISPR-associated RAMP Cmr4 family protein family protein |
|---|
| Protein accession | YP_001434285 |
|---|
| Protein GI | 156744156 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1336] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR02580] CRISPR-associated RAMP protein, Cmr4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.400432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCT ACCAACGACA ACAATATCTG TTGATGACGA TTGATCCGGT TCACATCGGC
ACTGGCGGGT ATCGCCTCGG TCGGGTGGAC AACAGCATCG TGCGCGAACC GGGCACTCGC
GTGCCCAAAA TCCCCGGTAC CAGCCTGCAC GGCGCGGCCC GTTCGTATGC GGCCCAACTC
TACGAGACAC CCGAAGCCGC CGGCCAGAGC CAGGACAACG TGCAGTATCC CGACCAGAAT
CCGGTCTGCT ACACCTTCGG CTACATTGAG AAGACGGGCA ATGGCAACAA CGTGAAAGCC
TACTCCGGCG TCGTCAATAT CTTTGACGCC CACGTGCTGC TCTTCCCGGT CTATTCAATG
ACCGGGCCGG TGTGGGTGAC GACGCTCGGA CGGCTGCGCG AGGCCGGTTT TACCGTGAAG
CACAACGGCG CCGCTCTTGA ACCGCAGACC AGCACGGCAT TGCTTACCTG GGATCGGAAA
GATGACCTTA ACCTGGGCTG GCTGATGGTC AATGTGGCCG GCAAAGCGGA GGTGACTGCA
CCAAACGGAT GGCAGAATGA ACAACGCTGG CAGGCCATCG CCAACCGCAT CGTGCTGGTG
AACGAATCGC TTTTCAGCCA CGTGGTCAAC AGCAATCTCG AAGTGCGCAC GTCGGTGGCA
ATTGACCCGG AACGCGGCGC GGCGGAGGAG GGGGCGCTCT TCACCTACGA AGCGCTGCCG
CGCGCGACCT TCCTGACGAC AGAGGTGGTG CTGGATGATT ATCGAGAAGC GTTTCCCAAA
GACAAATGTG GTCAAGGAAA GACTGACAAG AACAACCCGT TGCCCGGCGA CCCATGGAAC
TGCCCGCTAG ATGTAGTCAA AGCCGGTTTG CGTATGATCG AATGGCTCGG GGTAGGCGGC
ATGGGCACAC GCGGTTTTGG CCGGCTGGTT ATCGTAGGTG AACCGCTGAA GCAAAAATAC
GGCGAGGAGC GAGGCAATGA GCAATAG
|
|---|
| Protein sequence | MATYQRQQYL LMTIDPVHIG TGGYRLGRVD NSIVREPGTR VPKIPGTSLH GAARSYAAQL
YETPEAAGQS QDNVQYPDQN PVCYTFGYIE KTGNGNNVKA YSGVVNIFDA HVLLFPVYSM
TGPVWVTTLG RLREAGFTVK HNGAALEPQT STALLTWDRK DDLNLGWLMV NVAGKAEVTA
PNGWQNEQRW QAIANRIVLV NESLFSHVVN SNLEVRTSVA IDPERGAAEE GALFTYEALP
RATFLTTEVV LDDYREAFPK DKCGQGKTDK NNPLPGDPWN CPLDVVKAGL RMIEWLGVGG
MGTRGFGRLV IVGEPLKQKY GEERGNEQ
|
|---|
| |