Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4222 |
Symbol | |
ID | 5541733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5461758 |
End bp | 5462687 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640896329 |
Product | ATP-dependent transcription regulator LuxR |
Protein accession | YP_001434267 |
Protein GI | 156744138 |
COG category | [K] Transcription |
COG ID | [COG2909] ATP-dependent transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.157864 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGCTCC CGCATTCGCG TGATTGCGCG CGCTCGGGAT CACTGCGCTG GCGATCTCCG ATGATCACCC TGCCTGCCGC GTGGCGCGAA GCGAACATTG CCCTGGCGTT GGAACAACAG GCAGGCGGCG TGCCAGACGT CAGTTTGCGG CTGTACGACG TCCTCCCCAA ACTGGAAACT CTGAACGGCA CCCTTGATTC TGCCCGTAGG ATGGCAGATG ACCTGGTTGC CTCCATGCAA CGCGGCGGAA TCACCAACGC CATAGACCGC GCCCGCGGAC TGCGAGCCGA GTTGATGTTC AGGCTGGGCG ATTGGGCGGC GTTTGAAGCG TATGCGCAGG GGTATCATCC GCCCAAACAG CCGTTGTTCT TTCCCTATCG GCTGGAGACG CTGCTGCAAA TCCGTTATCT GGCGCGGCGA AAGGCTTGGG ATGAGAGCCG CCGTCTGATG CAGGAGCAGG CGCGGCTGGC GCGCGCAGCG GGGTATCTCG AATATGAGAT GGAACTGCAC ATCGTCGGCG CGTTGCTGGA ACAGGCGGCG GGCAATTCCT CCAACGCCAT CCGAATGCTG GCGCGCGCGC TGGAGATTGG CAGGGCGGGC GGCTATGTGC GTGTTTTTCT CGATGAAGGC GAAGAGATGC GCACCCTGCT GGCGCAATTG CGCAGGGATG ATTTTGCGGC GAGCCTGCTG GCGGCGTTTG GCAAGCCCGC CCATATTGAC CAATCTGCCC TGATTGAACC GCTCACCGAG CGCGAGATGG ACGTGCTGAA ACTGGTTGCC GAAGGACTCT CGAACCCTGA AATTGCAGAA AAACTGTATC TCTCGGTTGG GACGGTCAAG ACGCACGTCA AGCACATTTA CGGCAAACTG GGCGTGGATG ACCGCGTGAC GGCGGCGGGC AAGGCGCGCG AGTTGGGGTT AATCAACTGA
|
Protein sequence | MTLPHSRDCA RSGSLRWRSP MITLPAAWRE ANIALALEQQ AGGVPDVSLR LYDVLPKLET LNGTLDSARR MADDLVASMQ RGGITNAIDR ARGLRAELMF RLGDWAAFEA YAQGYHPPKQ PLFFPYRLET LLQIRYLARR KAWDESRRLM QEQARLARAA GYLEYEMELH IVGALLEQAA GNSSNAIRML ARALEIGRAG GYVRVFLDEG EEMRTLLAQL RRDDFAASLL AAFGKPAHID QSALIEPLTE REMDVLKLVA EGLSNPEIAE KLYLSVGTVK THVKHIYGKL GVDDRVTAAG KARELGLIN
|
| |