| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4194 |
|---|
| Symbol | |
|---|
| ID | 5541705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5425194 |
|---|
| End bp | 5426342 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640896304 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_001434242 |
|---|
| Protein GI | 156744113 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00490825 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTAC CAAGCAGACG CCTGTTGCGG CGTTGGCTGG CGCTGGCATT CTTTTTTGCT
GCGCTGGTCC AGGCGACGCC GCTGACAGCA GCAGACCATG CTGGCGTCGC CCCCGAACTC
TGGTTGCCGA CGCCTTTCGG TGAGCAGTGG CGCATCATTC AGGGGTATGC CTGTGGCACC
CACAACGGTT GGGATCGCTA CTCGCTCGAT CTGGTGCGGG TCGGCGGTCC AAGCGCTGGC
GCGCCGGTGC GCGCTGCCGC CGATGGGGTC ATTTTCGTAT GGGCGCGGCG CAGCGGCACC
CTTATCCTCC GGCACGAAGG CAACCTCTAC ACCATGTACA CGCATATGCA GCATGCCGAG
AATCCACAGA TCGGACGGAT CGTGGCACGC GGCGACGTGA TCGGCGCCGT CGGCGATCGC
GGATCGCCAG GTATCGTTCA TCTGCACTTC ACCGCATTTA TGGCTGAGGG ACCCTGGGCA
CGCAACCGAC GTTCTGTGCC GTTGCGCTTT GCCGAAGGGT ATGATCTGCC AGAGATCGGC
GGATGCAACC AGCATGGCGG CAGAGTCCTG GTTGCCGGCA GCACACCCCT GTCGAATGTC
GAAGGGATTG GATTCGCCGG AGCAGAGATC GGACGCTGGT ACGGCAGCGA CGTGCAGATC
GAGTTCAGCG GCACAGCGAT GACGGCAGGG TATCGGGCAG CGTGGGGCGC CGATCCGGTT
GGCGCGGCGC CGGAGATGAC GATGCCAAAC GGGAGCATAC GCCTCGCCGA AGCAGGGGAA
GGGTTGCACA CGCTCTTCGT GCGCGGATGG GACCGCAATG GGCAGCAGAC AGTTGCCGCC
TTCGGTCCGA TAGGGTATGA CACAACGCCG CCAGAGTCTC CGCCCGCAAT TGAGCCAATC
TTTTTGAAAG CCGGGCAGGC GACCCTGATT GCCTGGGAGC CAGCCGGTGA CGCCGCTTCT
GGTGTTGCCG GGTACCGCCT CTCCATCGGC ATCGATCCAG AAGGCACCTC CGAATGGTTC
ACCCCCTTGC CGGAGATCGA AGCGCCGCCG CTTGCGCCCG GCGAGTACCT GTTGCGGGTG
CAACCCATCG ATTATGCCGG CAATGCAGGC GAATGGGTGA CGATCGCCAG AATCGTCGCG
CGCCCTTAG
|
|---|
| Protein sequence | MMLPSRRLLR RWLALAFFFA ALVQATPLTA ADHAGVAPEL WLPTPFGEQW RIIQGYACGT
HNGWDRYSLD LVRVGGPSAG APVRAAADGV IFVWARRSGT LILRHEGNLY TMYTHMQHAE
NPQIGRIVAR GDVIGAVGDR GSPGIVHLHF TAFMAEGPWA RNRRSVPLRF AEGYDLPEIG
GCNQHGGRVL VAGSTPLSNV EGIGFAGAEI GRWYGSDVQI EFSGTAMTAG YRAAWGADPV
GAAPEMTMPN GSIRLAEAGE GLHTLFVRGW DRNGQQTVAA FGPIGYDTTP PESPPAIEPI
FLKAGQATLI AWEPAGDAAS GVAGYRLSIG IDPEGTSEWF TPLPEIEAPP LAPGEYLLRV
QPIDYAGNAG EWVTIARIVA RP
|
|---|
| |