Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4190 |
Symbol | |
ID | 5541701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5421648 |
End bp | 5422310 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640896300 |
Product | FliA/WhiG family RNA polymerase sigma 28 subunit |
Protein accession | YP_001434238 |
Protein GI | 156744109 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000210037 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCGGTTG ATGGTATGGA ACAGAAACGT TCGTGGCATG AAGTGGTGCA GGAGTGTCAG GATCGCGTGT CCCGTCTACG CGTAGTGCTG ACGACAGGCG GCGCGATGCC GCCTGAACAT AAGGCAGACC TCGACGCGGT GATCCTTGCG GTGCGCAACT GGATCTATGG GCGGGCGCGC CGGTTGGGGC TTGATGAAGA TGCCCGCAAC GATGTGCTGC TCGAATTCAT TCAGCAACTC CATCGCGATC TGCGCAGCCC TGGATTTGGC AGCATGGAGC GCAGATTCGG CGCATATGTC TCGACCACGG TCAACCGCAT TCTCTACGAA AGAAAAAATC GGCAGCAGAA CATCTTATCT TTTATTGAGA GCCTGGACGC GCCGTTTGGC GACGACGGTC CGCCGCTCCA CGAGGTCATC GAAGATCCGA CGCCGGCGCG TCTTGCCGAA GAGCATGACG AAGAACAGGT TCGCAAACGA TTGTACGAAG CGATCGCAGC GCTTCCTGAA ATCGAACGTG CGGTTGTTAC GCATCGCCTG AGCGAAGTAC GCGGGATCGA CATCGCACAG ATGCTTGGCA TGTCGCCCGC AAATGTTTCA CGTATCTACA AGCGCGCAAT CAATCGGTTG CGTCAGGCAT TGACTGCCGG GGAATCATCA TGA
|
Protein sequence | MAVDGMEQKR SWHEVVQECQ DRVSRLRVVL TTGGAMPPEH KADLDAVILA VRNWIYGRAR RLGLDEDARN DVLLEFIQQL HRDLRSPGFG SMERRFGAYV STTVNRILYE RKNRQQNILS FIESLDAPFG DDGPPLHEVI EDPTPARLAE EHDEEQVRKR LYEAIAALPE IERAVVTHRL SEVRGIDIAQ MLGMSPANVS RIYKRAINRL RQALTAGESS
|
| |