| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3875 |
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| Symbol | |
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| ID | 5541380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5067112 |
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| End bp | 5068611 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640895985 |
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| Product | RecB family-like nuclease |
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| Protein accession | YP_001433929 |
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| Protein GI | 156743800 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2251] Predicted nuclease (RecB family) |
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| TIGRFAM ID | [TIGR03491] RecB family nuclease, putative, TM0106 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00135732 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0591762 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTGTG AGCGGCGTGT CTGGCTCGAC GGGCGCAGCG CTCAACCGCC GCAGACTGCC
CCCACTGCCG ATGCCCGGGC ACGCATGACG CTGCGTGCCA ACCACAAATG CCACATCCTC
GCTGCAATTG AAGGAGTCGA AGATTTCTCA GAACTTCCAT GGAACGAACG GGTGACCCAG
ACACGCCTCG CAATGCAACG CGGCGCAGCA ATGATAAGCG GCGCCGCGCT CGAAGCGCCA
ATCGGCGGTC GCCTGCTACA TGGCGCTCCC GACCTTCTGC AACGCCAGAC TACTGCCGCA
TCAGGCGCAT GGATCTACGA GCCGATTGCC ATTGTGCTGC ATACCCGACC CACCCGCTGG
GAACGGCTCT TGCTCGACTC GTGGCGCTGG CTCGTCCGGC AAACGCAGGG ATGGGATCAT
GACCCGCCGG GTGAACTGTG GCTCGGCGCG AACGGCTATA GACCAGTATG TATCAAACGC
CAGACCGCAT CGCTCGCTGC GTTCACTGCA CAGATACGGC GCGCCATTGC GATTGCCGCC
GGGGAAGCCC CACCGATCTG GTTCGATAGC GACCATTGCC CGTTTTGTCC ATGGCGCACC
TCGTGTGATG CCGCAGCGCA TGACACCCAC GACATCGCCC TGATCCCCAG ACTGAGTCGG
CGGCAAGGGA GCGCCCTACG GCGGCTTGGC ATCCATCGCA TCGATCAGGT CATAACGCTC
GATCCTGCAA CCATGACGAC ACTGCCGGAC CACTCGTCCG CAACGGAGGC ACGTCTCCGA
CGCCAGGCGC AGGCATTGCT GACCGATCAA CCATTACCGG TCAGCGCCGC CATTCCGTCT
CTGCCGCAAG TCCGGCTCTT TCTTGACATC GAGAGCGATC CGCAGACGCG CGAGCCGTGG
GCATTCGGGC TTGCCGGCGC ACCCGGCGAC CGCTTCGTGA TTGTCGTGGA ACCCCTCGTG
GCAGGCAGCG ACGTTCGGCT CAACGGCATC CCTGTCATTG GGGTGCACAG TGCGCATGAG
GGTTGGCAGC GCGTGCTCCA CGCCGTGCGC GCGACAGGAG GTGCGCTGGC ACACTGGGGA
GAAGCCGAGC GCCTGATGCT CGAGCAGAGT GCGGATCCGC ACACATACCA GGAACTCATC
CCCCTCATGA TCGATGCACA ACGCGAACTG TACAAGCGCG TCGTACTTCC GACACCCCGC
CAGAGCGACC AGCGCGGCGG CGGATTAAAA GCCGCTGCGC GCTGGCTGGG GTGGAGGTGG
TCCCCAGGCG CCGATCACTG GACGCTGGCA TGGGAGGCAT ACCGGCAGTG GCGGGCACAA
CCATCGCCAG CCAATGTTTT CGATAGACTG ACGCCGGCAA TCGTCTATCT GGCAACCGAT
GTCGAGGCGC TGGCGGCAGT CTGGCGCTGG CTCGACGCTT TTGTGGCATC GATCAATGCA
ACCAGCGCGC CTCAAGACGG GCATGCAGAT CGAGATACCG CAACCAACCG CGAATGCTGA
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| Protein sequence | MRCERRVWLD GRSAQPPQTA PTADARARMT LRANHKCHIL AAIEGVEDFS ELPWNERVTQ
TRLAMQRGAA MISGAALEAP IGGRLLHGAP DLLQRQTTAA SGAWIYEPIA IVLHTRPTRW
ERLLLDSWRW LVRQTQGWDH DPPGELWLGA NGYRPVCIKR QTASLAAFTA QIRRAIAIAA
GEAPPIWFDS DHCPFCPWRT SCDAAAHDTH DIALIPRLSR RQGSALRRLG IHRIDQVITL
DPATMTTLPD HSSATEARLR RQAQALLTDQ PLPVSAAIPS LPQVRLFLDI ESDPQTREPW
AFGLAGAPGD RFVIVVEPLV AGSDVRLNGI PVIGVHSAHE GWQRVLHAVR ATGGALAHWG
EAERLMLEQS ADPHTYQELI PLMIDAQREL YKRVVLPTPR QSDQRGGGLK AAARWLGWRW
SPGADHWTLA WEAYRQWRAQ PSPANVFDRL TPAIVYLATD VEALAAVWRW LDAFVASINA
TSAPQDGHAD RDTATNREC
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