Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3871 |
Symbol | |
ID | 5541376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5060091 |
End bp | 5062253 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640895981 |
Product | methylmalonyl-CoA mutase, large subunit |
Protein accession | YP_001433925 |
Protein GI | 156743796 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR00641] methylmalonyl-CoA mutase N-terminal domain [TIGR00642] methylmalonyl-CoA mutase, heterodimeric type, beta chain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.949138 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.194963 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATG AGGTGCAGAC TACCATGGCT GGCGATGCAG CAGTACAACC GCTGTTCGAT ATGTTCCCCC CCGCCACCTA CGACGAATGG CGCGCAGCGG CGGAAAAGAC GCTCAAGGGC GCGCCGTTCG AGAAGCGACT GATCACCCGC ACCTACGAGC AGATCAGCCT TCAGCCGATC TACAATGCCG AAGATATTGC ATCTTTACCG CACATCACCT CGCTCCCCGG CTTTGCGCCA TTCGTGCGCA GCACGCGGAC GCTGGGCTAC GTCATTGGGC GCTGGGAGGT GTGTCAGGAA TTGCCCTACC CCACGCCGCG TGAAGTCAAT CAGGCGGCGC ATGATGACCT GCCGCGCGGG TTGACGGCAA TCAATGTGCC GCTCGACCGG GCGACACTTC ATGGTCTCGA TCCCGATGCT GCACCGGTGG AATGGATCGG CGCTGGCGGC ATGTCGCTTG CCAGTGTCGA GGATGCCGCG ACGCTGTGTG ATGGCATGGC GCTCGACCGC ACGCCGTTGC TCGTTGCTGC CGGCGCCGAT GCGCTGCCGG TTGCGACGCT GATCCTCGCC GCTGCGGAAC GGTACGGTAT TGCGCACGAT CAGGTGCAGG GGTGCATTGG CGCCGATCCG CTTGGCGCGC TGGCGATGTT TGGGACGTTG CCGCTGTTGC TGGAGCGTTG CTACGATGCA ATGGCGCGCT GGACGGCATG GGCGCAAACC CACGCGCCAC GCCTGCGGAC GATTATGGTA GCGACTCATG GGTACCACAA TGGCGGCGCG ACGGTGGTGC AGGACCTGGC GTGCGCGCTG GCGACCGGGG TGGCGTATCT GCGCGCGATG CAGGAGCGCG GGCTTGATAT CGATGGTGTT GCGCCGCGGA TGCAGTTTGC CTTCTCGATC GGGTCACAGT TCTTTATGGA AATTGCCCGC CTGCGCGCAG CACGCATGCT GTGGGCGCGC GTCGTGGCGG CATTCGGCGG CAATGACGAG TCGCAAAAGA TGCGCATTCA CGGGCGCACA TCTGCCTGGA CGAAGGCGCG GTTTGATGCC TACAACAATA TGCTGCGCGC CACCGGCGAG GCGATGGCAG GCGTGATGGG CGGCGTTGAT AGCCTGCACG TCAGCCATTT CGACGAGGCG CTGGGACTGC CTGACGAGTT TTCCCGTCGG ATTGCGCGCA ATGTGCAGAT TATTCTCCAA GAGGAGTGCA ATTTCATTCG CTTGATCGAC CCACCCGGCG GTTCCTGGGC GATTGAGTCG CTGACCGATC AGGTGGCGCA GAAGGCGTGG GCACTGTTCC AGGAGATCGA GCGCCGGGGC GGTATGGCTG ATGCGCTGGC TGCCGGGTTT CCACAATCTG CAATTGCGGC AACGCGCAAC GAGCGTTTCT CTGCCATCGC ACAGCGCCGC GAGGTGATCA TCGGCGTGAA CATGTACCCC AACCTGAAGG AAAAGCCGCT GACGGTGCGA CCGGTAGACC ACGCCGCCGT GCAGGCGGAA CGCGCCGCTG ATGTGCGACG TGTGCGTCAG ATGCGCGACT CGCAGGCGTG CCAGGATGCG CTCGATGCGC TGGTGAGTGC GCCGCAGGAT CGCCTGGTGG AACTGGCGCT GGCGGCAGCG CGCACAGGCG CAACCCTCGG CGATCTCGCA GCGGCGCTGG CATCAGGCGA CACCACCGGT CCAACCATCG AGTCGATCCC TGCACATCGT GCAGCGGAAC AGTTCGAAAC GTTGCGCATG GCAGCGGATG CGTATGCTGC GCGCACTGGC GCGCGCCCGA AGGTCTTCCT TGCCAATATG GGACCGATTC CGCAGCACAA GGCGCGCGCC GATTTTTCAA CCGGCTTCTT CGAGGCAGGC GGCTTCGAGG TGATTGGCAA CGATGGCTTC ACCACAGTCG AAGAGGCAGC GCAGGCGGCG CTGGCGTCGG GAGCGGGCAT TGTCACGATC TGTTCGACCG ACGACACCTA CCCGGAGATT GTGCCGCCGC TGACAAACCT GATAAAATCG AATCGTCCAG ATATGACTGT GGTGCTGGCA GGGTATCCTG CCGATCAGGT CGAAGCCCAT CGGGCGGCCG GGGTCGATGA GTTTATTCAT CTTCGAGCGA ACTGTTACGA GACCCTGGTG CGGTTGCAGC AGTTGAAAGG AGTTGTCGCG TGA
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Protein sequence | MSDEVQTTMA GDAAVQPLFD MFPPATYDEW RAAAEKTLKG APFEKRLITR TYEQISLQPI YNAEDIASLP HITSLPGFAP FVRSTRTLGY VIGRWEVCQE LPYPTPREVN QAAHDDLPRG LTAINVPLDR ATLHGLDPDA APVEWIGAGG MSLASVEDAA TLCDGMALDR TPLLVAAGAD ALPVATLILA AAERYGIAHD QVQGCIGADP LGALAMFGTL PLLLERCYDA MARWTAWAQT HAPRLRTIMV ATHGYHNGGA TVVQDLACAL ATGVAYLRAM QERGLDIDGV APRMQFAFSI GSQFFMEIAR LRAARMLWAR VVAAFGGNDE SQKMRIHGRT SAWTKARFDA YNNMLRATGE AMAGVMGGVD SLHVSHFDEA LGLPDEFSRR IARNVQIILQ EECNFIRLID PPGGSWAIES LTDQVAQKAW ALFQEIERRG GMADALAAGF PQSAIAATRN ERFSAIAQRR EVIIGVNMYP NLKEKPLTVR PVDHAAVQAE RAADVRRVRQ MRDSQACQDA LDALVSAPQD RLVELALAAA RTGATLGDLA AALASGDTTG PTIESIPAHR AAEQFETLRM AADAYAARTG ARPKVFLANM GPIPQHKARA DFSTGFFEAG GFEVIGNDGF TTVEEAAQAA LASGAGIVTI CSTDDTYPEI VPPLTNLIKS NRPDMTVVLA GYPADQVEAH RAAGVDEFIH LRANCYETLV RLQQLKGVVA
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