| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3733 |
|---|
| Symbol | |
|---|
| ID | 5541235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4894910 |
|---|
| End bp | 4899229 |
|---|
| Gene Length | 4320 bp |
|---|
| Protein Length | 1439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895844 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433791 |
|---|
| Protein GI | 156743662 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00226773 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGTT TCCCTTCCGC CCTCGCGCTG CTCGTCGCGT TGCTGATCAT GGGGTCGCCG
CTGCTTGTCG GTCCTGCCGC GTCGGTCCGG GTGGCGCAGG CGGCGGGTGA GTTTGTGGTG
ACAACGGCTG AGGACGCCGA TGGCACGACA TGCCCTGTCT CGACAAGCGG CAATCCCGCT
GCTCCCGATC CGACGTGTTC GTTACGTCAG GCGATCAAGG CGGCGAACGC CGCCGGCGGC
GGTACTATTA AGTTCAATAT TCCGCCCTCC GGTCCGGCGT TTGAAACGAA CGGTCTCTAC
CGCGCCATCC GCATTCGCGT GCGATATGTC TATGGTCCGT TGCCCGCGCT TGAAGGCAAC
ATCACGATTG ATGGAAAGTC GCAGGAACTG AACTGGCCCA GTCAGGCAAA TCTCATTGGT
CCTGAGATCA TCATCGATGG CTCAGAGCTG CTCGACCGCA GTGGCATTCG TCTGATCGGG
AGTGGGAATG TCGTGCGCGA GATTGCGGTG GTTAATTTCA AGTCCAGCAG CGCCACGCCG
AGTTTTGGTC AGGGGGTCGG CATTGATGTG GTGAGCGGCA GCAACCATCG TATCGAGGGC
AGTTATGTTG GTATCGATCC GGTCTCGCCG ACATTGACGC TGAGCGGGAA TGGTTTTGCC
GGCATCTGGG TCGAGCAAAC GGCGGAGAAT ACGGTCATCG GCGGGTTGCG CACCGACTCC
TCGAAAGCGA ATTTCATTAG CGGCAACAAT CTGGACGGGA TTGTTGTTCA GGGAACGGGA
ACCAAAATCC AGGGCAACTT TATCGGCGTC GGGCGCTTGC TCAGCGCCGA AACGTTCCCA
TTGCGCAACC TCGGCGCCGG TATTATTGTG CGCTATGCAA ACGGCACGAT CATCGGCGCC
ACGCCAACCG AGCCGGACCC GGCATACGGT AATGTCATCG CCGGTAACAA CAATTTCGGT
ATCGTTATCA ATGGCGGAAC GAATACGCAG ATTACGGGGA ATTACATCGG TCTCGGCTCA
AATGTCTCGT CTGCACTGAT CGTTCCCGTT CCAAATGTGT CTGGCGGTAT TGAGGTGCAT
TCGGAAGAGT TTCCGGTCAA CAATATCGAT ATTGGACTTC CATCGCCGGA TATGACGACG
AACCGGCTGC GCAACTTTAT TGCCGGCAAT ACCGGTCCGG GCATTACGCT GCGCGGTGAT
CGTTTGAACA ATATTCGGAT TGTCAACAAT TATATCGGCT TGAACGATCT TGGTCAGCCC
GTGAGCGGGA CGAACAACAC CGGCGGCGGG ATCGTCATCG AGCGCGGGGC GCGCAATATC
ACCATCGGCG GCGCGACGAT CAATAAGCGC AATGTCATCT CCGGCAATAC CGGCGACGGG
ATCGTCGTTC GCGGGCGTAA TCCGTTGCTA ACAACGCAGA ACAACACCAT CATCGGCAAC
TATATCGGCA CGAATGTCAG CGGGTCGCTG ACCGGTTCCG GGTTTGCCAA CCGCTCCGGC
ATCGTGATCG GCGATCATTC GCACAATACG GTCATCGGGC AGCCGGGTGC GCCGAACCGC
ATCGGGTTCA ACCTTCAGTA TGGCGTGGCG ATTACCGGCA CGAATATCCT GACGACGACG
CTGACGGATA ACGCCATCGT CTCGAATGGT CTCGATGGCG TCTATGCCGT TGGCGCGGTC
AATCTCAGCA TCACCGGCGC GACTACGCCA ACGCTGATCG CCGGCAATGG TCAGAATGGT
GTGCGCATCG ATGGCGGGCA GTCGATCACC ATCCAGAACG CCACGCTGTC CGGCAATGGC
GATGATGGCG CGCGCCTGGC GAATGTGACA CAGACGACGC TGCGCAATGT CGTCGCGGCG
CAGAACGACG ATGGCATCGA CATTGCCGGC GCAGTGGAGA CGCTGATCGA GAACAGTCAG
GCAAACATCA ACCGCGAAAA CGGCGTGCGC TTCACCAACG GCGTCACCAC GACCCTCACC
GGTCTGACCT TCCAGCAGAA CCAGCAGAAC GGTCTCGCGC TTACCGGCGT GCTGACCGCA
ACGCAGATCG AGTCGAGCCA GGCGATCAGC AATACGCTCA ATGGGTTTCT GGTCAACGGC
GCGACTGATG GCATGATGAT GTCGAGCAAT ACGATCATCG GCAACGGCGC GGCGGGCATG
GCGCTGACGC TGACGCCGGG AGTTGCGCCG GTGCGCGACG TGATGGTGAC GGGAAATATG
CTCGACCGCA ATGCCTTTAG TTCGCCCGCC TTCGGCATCC AGATCAGCGG CGGCACGGAG
GTGGTGACGG TCACCGGCAA CACGGTCGAG GGAACGCGCA ACGGTGGCGG TGTGTTGCTG
CCGGGGGCGA ACCAGATGAC GCTCAGCGGC AACGTGGTGC GCTACAACAA CGGTCCGGGG
TTTCGGGTCG AAAGCGGCAG CGACCGTGTC ATTCTCGAGG GGAATGATGT CGTTTCGAAT
ACGGTCGGCA TCGAGGTGCG CAGTGCGACG ACGATCAGCA CGGTCGTGCG CTTCAACAGC
ATTAGCTTGA GCGGCGCAAC CGGGTGGGGC GGAACCGGTT CTGGCGTTGG TGTTGCCGTC
AGCGATGCGC AACGCACCTT GATTGAGGGG AATTCGATTG TGAGTAACCT GGGCGCGGGC
GTGCATGTGA GCGGCGCGGC GGCGCAGACG CAGGTGCTGG ACAATTTCAT TGTCAACAAC
GCGCTCGGCG TGCTGGTGGG CGCGCCGGTT GGCGGTCCGC TCACGCCGCC GTACCCGCAG
CAGACGCGGA TTACCGGCAA TAGTATCAGC GGCAACGGCA TCCCGCCGGA TGGTCCGTTC
CCGGTCGATG AGACGTTGCT GGGGCGCGGC ATTGTGCTCA ACCCCGAAAC GCCGACCGGC
GGCGTCGCCG GTCATCCGAA CAACGACATT GACCCGCCGC TCCAGTCGTC GCTGCGTATG
AGCGCCGCCG GGGTGTTGAC CGGTCAGGTC AACCCGGTGA GCGCGCCCGG CGGGTGCCCG
TCCATCGGCG GCGCGCGCTG TCTGGTGCAG ATTTTCCGCC CCGACCAGAC GATGCTCGAT
GGGCAGGGGC AGGAGTCGGT TGGCGAGACC ATCGTTGACG CGACCGGCGC ATTTACTGTG
ACAGTCGGCA GCATTCCACG CCAGTTGACG CTGACGGCGA CCGATCCGCT GAGCAACACG
TCGCGCTTTG CGATCTTTGC GCCGCGTCCG GCGCTCAGCA TCAGCGCGCC GCAGGCGCAG
GCGGCAGACC CCGGTCAGAT CATTACGTAC ACCCATACGT TGACCAATGA GGGGAATATC
GAACTGCAAG ATGTGCGCAT CCTGGTGACG ACCTCGCGCG GGTGGGAGAA CCTGTCGCCG
CCGATTGCCA TTCAGCCCTC CGGTTCGTTC TCGCTGGCGC CGGGTGAGTC GCGCCAGGTA
ACGGTGTCGG TGCGTGTGCC GACCGGCGGC ATCCCGCAGG CGGCGCCGGG GACCGATCTG
ATGACGGTGC GCGCCGATGG AACCACTGTC AGTAACGGCA ACACCTACAC CGCGACGACT
TCGCTGGTGA ATACGACAAC CGTCAATGCG CGCATCTATC TGGAACTGAC GCCGACGTTC
ACCGAGGGGC GCGGCAATCC GGGGGTGACG GTTCCGTACT CGTTCCAGGT GCGCAACACC
GGCAATATCT CGGCGACGAC CGGTATCACT GCGACGTTCG ATGATCTGGT CTTTAGCGTC
AACTGGCAGC GGTCGCTTTC GACGACGAGC CTGACGATTC CGCCGGGGGA GACGCGCGCC
TTCCAGTTGA CGGTGACCGT GCCGCCGGAG AGCGCCAACC CAATTTCCGG GACGTATGCC
GATGTGACCG TTGCGATCAC ACCGACCGTT CCGCTTGATC CGTCACAAGC CAGAACGGCG
AAGGCGCGCA CTATCGTCGG GCAGTTGTCG CGGGCGCAGA TGACGCCGGC GAGCGCCGAA
AAAGAGGGCG CGCCGGGTGA AACGGTCACC TTCTTGCACG AGATCACGAA CCTGGGCAAT
GGCGTCGATA CGTTCCAGGT TCGCGGCGTG CCGGCGCTCG GCAGTCAGGT AAGATTCACG
TCGCTGACGA GTGGGGTGTC GATCAACAGC GAGGGGCGGT TTACCCTGAA CCAGGGCGCA
ACGGCGATCA TCCGCGTCGA GGTGACGGTC AATCCGCAAC TGGTGAACGG CAATGTCGAG
AATGTCTTCA TCGAACTCAG AGACCTGAAC GGCAACGTGA TCGGCGGCGC ATTCGCGCAG
GACCGTGTGC GGGTGGTCAG CGCCATTCGC AAGGTCTATC TGCCGCTCGT TGTTCGATAG
|
|---|
| Protein sequence | MSRFPSALAL LVALLIMGSP LLVGPAASVR VAQAAGEFVV TTAEDADGTT CPVSTSGNPA
APDPTCSLRQ AIKAANAAGG GTIKFNIPPS GPAFETNGLY RAIRIRVRYV YGPLPALEGN
ITIDGKSQEL NWPSQANLIG PEIIIDGSEL LDRSGIRLIG SGNVVREIAV VNFKSSSATP
SFGQGVGIDV VSGSNHRIEG SYVGIDPVSP TLTLSGNGFA GIWVEQTAEN TVIGGLRTDS
SKANFISGNN LDGIVVQGTG TKIQGNFIGV GRLLSAETFP LRNLGAGIIV RYANGTIIGA
TPTEPDPAYG NVIAGNNNFG IVINGGTNTQ ITGNYIGLGS NVSSALIVPV PNVSGGIEVH
SEEFPVNNID IGLPSPDMTT NRLRNFIAGN TGPGITLRGD RLNNIRIVNN YIGLNDLGQP
VSGTNNTGGG IVIERGARNI TIGGATINKR NVISGNTGDG IVVRGRNPLL TTQNNTIIGN
YIGTNVSGSL TGSGFANRSG IVIGDHSHNT VIGQPGAPNR IGFNLQYGVA ITGTNILTTT
LTDNAIVSNG LDGVYAVGAV NLSITGATTP TLIAGNGQNG VRIDGGQSIT IQNATLSGNG
DDGARLANVT QTTLRNVVAA QNDDGIDIAG AVETLIENSQ ANINRENGVR FTNGVTTTLT
GLTFQQNQQN GLALTGVLTA TQIESSQAIS NTLNGFLVNG ATDGMMMSSN TIIGNGAAGM
ALTLTPGVAP VRDVMVTGNM LDRNAFSSPA FGIQISGGTE VVTVTGNTVE GTRNGGGVLL
PGANQMTLSG NVVRYNNGPG FRVESGSDRV ILEGNDVVSN TVGIEVRSAT TISTVVRFNS
ISLSGATGWG GTGSGVGVAV SDAQRTLIEG NSIVSNLGAG VHVSGAAAQT QVLDNFIVNN
ALGVLVGAPV GGPLTPPYPQ QTRITGNSIS GNGIPPDGPF PVDETLLGRG IVLNPETPTG
GVAGHPNNDI DPPLQSSLRM SAAGVLTGQV NPVSAPGGCP SIGGARCLVQ IFRPDQTMLD
GQGQESVGET IVDATGAFTV TVGSIPRQLT LTATDPLSNT SRFAIFAPRP ALSISAPQAQ
AADPGQIITY THTLTNEGNI ELQDVRILVT TSRGWENLSP PIAIQPSGSF SLAPGESRQV
TVSVRVPTGG IPQAAPGTDL MTVRADGTTV SNGNTYTATT SLVNTTTVNA RIYLELTPTF
TEGRGNPGVT VPYSFQVRNT GNISATTGIT ATFDDLVFSV NWQRSLSTTS LTIPPGETRA
FQLTVTVPPE SANPISGTYA DVTVAITPTV PLDPSQARTA KARTIVGQLS RAQMTPASAE
KEGAPGETVT FLHEITNLGN GVDTFQVRGV PALGSQVRFT SLTSGVSINS EGRFTLNQGA
TAIIRVEVTV NPQLVNGNVE NVFIELRDLN GNVIGGAFAQ DRVRVVSAIR KVYLPLVVR
|
|---|
| |