| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3732 |
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| Symbol | |
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| ID | 5541234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4889426 |
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| End bp | 4894894 |
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| Gene Length | 5469 bp |
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| Protein Length | 1822 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895843 |
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| Product | parallel beta-helix repeat-containing protein |
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| Protein accession | YP_001433790 |
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| Protein GI | 156743661 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1470] Predicted membrane protein |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00976047 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGACGCGCG CATACCGTCT GCTCTTCGTT CTTGCGCTGC TGGCGTTCTC CGTCGTTGCG
CCGGCGCCGT CGGCGCTGGC GGCGACCTTC ACGGTCAATA GCACTGCCGA TGATCCCGAT
GCCAGCCCCG GCAATGGCGT CTGCCAGACG GCGGGAGGTC AGTGTACGCT GCGCGCGGCG
ATCCAGGAAG CCAATGCGCT GGCGGGACCC CATACCATTG CGTTCAATAT TCCGACTGCC
GCGCCAGGTT ATGACGCAGC CGGGTTCTGG CGCATCCGGC CAGCAAGTGC GCTGCCGGGC
ATCACCGCCG GAAATGTGAC CATCGATGGC AGAACGCAAC CGGCAGGAAA CCCCTCCTGG
ACACATCCGC GCATCGTCAT CGATGGTTCG TTGATCACCG GCGGCGCGAA TGGTCTGACG
ATCACGTCGT CGGGGAACAC CATCCGTCGC CTGACGATCC AGAACTTTGC GACCTCTGCA
TCCGATCTTC TGGGGATAAC CGGCATCGGC ATTTTCATCC GCGATCCAGG CGCAACCAAC
AATCGCATTC ATGGATGCTA CCTGGGCACG TCGCCGGACG GCAGCAGCGC CGCAGCGAAC
CGTCTCGCCG GGGTGCAGAT CCGCAATGCA GGGAACAATA TCATCGGCAA CCCGACGGCG
GGCGCCGGTC CCGATATCGA CACGGCCGGC GATAATGCGC TCGGCAACCT GATCTCCGGC
AATGGTCAGA CTTTGCTCAT TGCCGCAAAT GTCTACCTGA CCGCTTCGTC TTATGACGAT
GGGCGCGGCA ATGTGATCCG CGGCAACCTG ATCGGCACGA ACCTGGCGGG CAACGCCAAG
ATTGGCAGCG ATCCGGGCAA TCAGCGGTAT GGCGTGCTGC TGTACCAGTA CCTGGACGAT
ACCATCATCG ATGCCAACGT CATTTCCGGG CACGATGCCG TGCCTAACCC TTACGGCATC
TACGTATTTG GCGACAGCGC TGCGAGCAGT CCGACCGATA CGGTGATCAG CGGCAATGTG
ATCGGTACGA CAAAGGGGGG AACCTCAACG ACCCGCGTCC CCAATGGCGT CGGCATCTAC
ATCGGCAGTG CAAGCAACAC GCTGATCGGC GGCGCGACCC CGGCGGCGCG CAATATCATC
GCGGGCAATG GCGTCACGTC GCCGAATGGC CATGGCGTTC AACTGAGTTC GAGCAGGGTT
TCTGGCACAA CCATTCAGGG CAACTATATC GGTTTGAATG CCAATGGCGC TTCGTTCGGG
CGCAGCGGAA CCGACTCGCT GGGCAACCTG GGGCATGGCA TCTTTGTCGA GACCAATGCG
CGCCAGACGA CCATCCGCGA CAATGTGATC TCGAACAATT TCGGGAACGG CATTCGCCTG
TCGAGCGATG GTTCGGTCGT TGTCGGCAAT CGCATCGGGG TCAACACTGC GTCGCCGCCG
ATCTCCGACG ATACCTTTGC GAATGGTCAG GCGAGCATCT GGATCAGCCG CGGCACAACG
TCCAGCGCGT CGCCGGGGAA CCGGATCGGC GGCACGAATC CAGGCGATGC CAATGTTATC
GCTTATGGGC TGGGATCGAC GCCGGTTGCG GTCCAGATTC GCTCCGATGG CACGCCAAAT
ACATCGAACA ATGAGGTCAT CGGTAATTTT ATCGGTGTGG CGCCGACGGG CGATGCCTTG
CGTGGCAGTC CATCAACAAG TTCGATTGGC GTATACGTCG TTGGCGCCAG CTCGTTGCGC
GCCGACAACA ATCGCATTAT CGGCAACACC ATTGGCGGAT TGGGCACAGG CATCCAGATA
GAGTCATCGT TTACAACCGG CAATGAGGTC AGCGCCAATA CGATTGGTCT TGCCGGCGCC
GGCAACCGAT ATGGCGTCTG GCTGTTTCAG ACGAGCGGCC ATACCATCGG TGGCGCCGGT
GGCGTCGGCG TGAATGCCAC ACGCAACATC ATTGCCAACA ATACCCTGCA CGGCGTTTTG
GTGGGCATGA ATTCGAACGG CAACACATTG TTGCGCAACC TGGCGCGCAA CAATGGCGGC
GCATCCGGCG GGCACGGGGT GATGGTCGAC GCGACTGTCA GCCAAGTGCG TATCTCTGGG
ACGGAAACGA GCGAGAACAA CGGGAAGGGG ATCAACCGCG CCGGCAGCCC GCCGCAACCG
CCGACAATTG TCGGCATTAC CGGCGGCAGC CCGCCAACCC TTCAGGTGCA GGTTCCGGCC
GGCGCCAACT GTGGCGCCAG CGGGTGCCGC GTCGAGGTGT TTACCAGCCC CACCCGCGAC
GACGCCGAAG GTCCGCGCTA TCTGGCATTC CTCGACGGCG CCGCAGCCGG CGCTACGGTC
AATGTGCCTG TGCCCGACTG CGACCGCTTC TTCTCGGCGA CGGTGACCGA TCAGACCAAC
AATACCTCGG AATTTACGCC GACGATGTTC GAGGCGCCGT TCAGTTGTCA GACCGACTTC
ATCCTTGCGC AGACCGGACG CACTCCGCCG GGAAGCGGAC CGGTCAATCC GGGCACGATT
GTGACTTACA CCTATACGGT GACGAACACC GGCGCCTCGC CGATTGTGGT TACCATCTCG
CGCACCGACT CAACCGGTTG GGCGTCGACG CCGTCGCCGG CGACCCTCAA TCTGAATGCC
GGGGCGTCGG GGACGTTCAC GATCTCTGTC GCAGTGCCCT CGAATGCGCT GGCGGGAAAT
TACACCTTCA GCGTGACGGC GCAGGTTGGC GCGACGCAGC GCACGCTCAA CACCACCACA
ACGGTGGCGC AGGTGTATGG TGTGGCGATT GCGCCGACCA GCCAGACCGC TACGTTCGCC
CGACCGCAGG TGATTACATT TACCCATGCG ATCACCAATA CCGGCAATGG ACCGGATACG
ATTGTGGTCA CAGCCGCAGT GTCGCCGAAT GATGGCGCGA CGGTCAGCGT CATAGGCGGG
AATTGTGTCA GTCTGGCGGC ATTCTCGTCG TGTACGCGGC AGGTTCAGTT GACCATCCCT
GTCGGTCCTG GCGCGTCGCT CTACACGGTG ACGGTCACTG TGAGTTCGAG TGGCAATCCG
GCGATTCAGG CGACGGCGAC CGATACGGCG TCGGCGGGCG CTGTGCCGCA GATCGCCCCC
GCTTCGCAAC TGAAGGAAGG ATTGCCCGGC GAGACGGTCA CGTTCACGCA CACGGTGACG
AACATCGGTC AGAGTGACGG AACCTTCACA CCGTCGCTCA CGCTGTCGCA GGGCAGCCCG
TGGAGTGGAA GCCTGACCGA TCCGTCGTCC TTCACTCTGA ACCCCAACGA CTCGCGAGTG
GTCACACTGA CCGTGACTGT GCCGAACACG CCGATTCCCG ATGCGGGCAC GCTGGTCACG
GCGACCCTGA CGGTGCAGGC AAGCGGTGGG GCATCAGCGG CGGCTGCGAG CATCACGCGC
GTTGGGCTGG TTCCAGGCTT TACCCTGAGT GCAGCGACCG TGCCGACGCT CAATCTGCCG
CCGGGCGCTA CGGCAGTCTT TACCCACACG TTGACCAATA CCGGCAATGG GTTGGATACA
TTCGTGGTGA CAGCGACGTT GAGCAGCGGT CTGGAAAACC TGACGGTGAC GCCGTCCGGT
CCGTTCTCGT TGGCGCGCGG CGCATCGCAG CAGGTGGTGG TGCAGGCGCG GGTGCGCGAT
GGGCAGGCGG TCGGAACTGA ACAGATTCAA GTGACTGGTG CGCGTGTTGG GGGTGGTGTA
CCGTCGCAAA CGCAGACGGA TACGGTGAAC GTGCAGGCGG CGCCGGGAGT GCGCCTCTCT
CCCGGTCAGA CGGAGAATAT CACGCCGCCA GGAAGCGTGA CCTTTACCCA CGTGTTGACG
AACGTTGGCA ACGTGGCGGG CAACTTCAGC GTGAGTGCGA GCGGTCTGCC GGCTGGCTGG
AGCGTCGCCG GTCCGACGAA CCTGTTTCCG GCGAACTGCC TGACGGGTCT GGCGGCTGGC
GCGACGTGTC GCTTCGATCT GACAGTCACC ACGCCGTTGC AGTTGCCGCA GGTTCCGGCG
GGCGTCTATC CATTCCAGGT GCAGGCGAGC ACTACCAGCG TATCGGATGC CGTGACCGAT
ACGGTGAATG TCCTGGCTGT CCCGCAGTTT GCGTTCACGG CGGATGAGAG TGGCAGCGGC
GCGCCCGACA CGGTGATAAC CTTCACGCAT CGACTGACGA ACACCGGCAA CGTGACCGAC
ACCTACACCT TCAGCATAGC GGTGAGCGGC GGCGGTTTCA GCGCCGACCC GCCGGCGACG
GTTGCCGCTG TGCCGCCAGG AGAGGGGCGG CTTGTGCCGT TTGCAGTGCG CATTCCGCCG
GCTGCACCTG CCGGAACGAC CGGTGTCATC ACGCTGATGG CGACCTCGGC GCAGGGTGCG
CCATCGCAGA GCGTCAGCGA TACGGTGACC GTCAATGAAG CCGACAACGC GCGCCTCGAA
GTGGTCGGTC CGGCGCAGCA GACGGTGTTT ACGAGCGGTG CGCCAGCGGT TGCAATCTAC
ACGCTGAATC TGTTCAATAC CGGCAACACG ACGATCAGTT ACACCCTGCG CCTGAACCCG
GCGAGCCTGA CCGGTGGATG GACTGCTGGC GTCGCGCCGA CACTCACAGC GGTACTGCCG
CCGAGCGCAA CGGCGCCGAC GCCGCTAACC GTGCAGGTCA GCGTGCCCGC CGATGTTGTC
GGAACGCAGG CGGTGACGGT CGAGGCGTTG CGCGGCGATG GCGCCGGTCC GGTGCTGGCG
GCGGAGACGC TCACCACAAC TGCGCAGTTG ATCGCAACCG GCGATCTGCT GACGCCGCCG
GAGAATCAGG GGTTTGGTCT GCCTGGCGAA ACGGTGGTCT ATACCCACAC GCTGCGCAAT
GTGCGTTCGG TGGCGGATAC GTTTGTCTTC AGCGCGCTCG TTCCGCTGGG ATATGAGGTG
ACTCTGCCGC CTGCGACGTT CCTGTCGCCT GGTGAAGAGC GCGAGGTCAG TGTCAGTATT
CGCATTCCAA GCGGCGTCTT CTCCAATACC GTCGATGCGA TGCGCCTGAG CGTGCAGTCG
GTCTCCGACC CGAATGTGGC AGCGGATGCA CGCGAGTATA CAACCATTCG CCAGGTGGTG
AGTGCGGTCA TGTCGCCCGA ATATGTCCGC GTCGTGCAGG CAGGGGATCA GGTGCAGTTG
ACCCATCAGT TGCTCAACAC CGGCAATACG ACTGACACCT TTGTGCTGAC CTTCACTCAA
ACGCTGCCGT GGAATGTCGT GCTGCGACCC TCGCTGCGCA CGCTGGGACC GAACCAGCAG
GCGCCGTTCA TTACGCTGGA TGTGAGCGTA CCGGCAAATG CGCCGTCGGG ATCGGTCAAC
CGCATCCGGG TGCGGGCGCA ATCGCAGAGC GATCCGACGA AGGTGTTCGA GGTCGAGAAC
CTGTTCGTCA TTCCGGTGGC GCTGCCGCAA GTGACGTATG AGGTCTATCT GCCGCTGGTG
AAGCGATGA
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| Protein sequence | MTRAYRLLFV LALLAFSVVA PAPSALAATF TVNSTADDPD ASPGNGVCQT AGGQCTLRAA
IQEANALAGP HTIAFNIPTA APGYDAAGFW RIRPASALPG ITAGNVTIDG RTQPAGNPSW
THPRIVIDGS LITGGANGLT ITSSGNTIRR LTIQNFATSA SDLLGITGIG IFIRDPGATN
NRIHGCYLGT SPDGSSAAAN RLAGVQIRNA GNNIIGNPTA GAGPDIDTAG DNALGNLISG
NGQTLLIAAN VYLTASSYDD GRGNVIRGNL IGTNLAGNAK IGSDPGNQRY GVLLYQYLDD
TIIDANVISG HDAVPNPYGI YVFGDSAASS PTDTVISGNV IGTTKGGTST TRVPNGVGIY
IGSASNTLIG GATPAARNII AGNGVTSPNG HGVQLSSSRV SGTTIQGNYI GLNANGASFG
RSGTDSLGNL GHGIFVETNA RQTTIRDNVI SNNFGNGIRL SSDGSVVVGN RIGVNTASPP
ISDDTFANGQ ASIWISRGTT SSASPGNRIG GTNPGDANVI AYGLGSTPVA VQIRSDGTPN
TSNNEVIGNF IGVAPTGDAL RGSPSTSSIG VYVVGASSLR ADNNRIIGNT IGGLGTGIQI
ESSFTTGNEV SANTIGLAGA GNRYGVWLFQ TSGHTIGGAG GVGVNATRNI IANNTLHGVL
VGMNSNGNTL LRNLARNNGG ASGGHGVMVD ATVSQVRISG TETSENNGKG INRAGSPPQP
PTIVGITGGS PPTLQVQVPA GANCGASGCR VEVFTSPTRD DAEGPRYLAF LDGAAAGATV
NVPVPDCDRF FSATVTDQTN NTSEFTPTMF EAPFSCQTDF ILAQTGRTPP GSGPVNPGTI
VTYTYTVTNT GASPIVVTIS RTDSTGWAST PSPATLNLNA GASGTFTISV AVPSNALAGN
YTFSVTAQVG ATQRTLNTTT TVAQVYGVAI APTSQTATFA RPQVITFTHA ITNTGNGPDT
IVVTAAVSPN DGATVSVIGG NCVSLAAFSS CTRQVQLTIP VGPGASLYTV TVTVSSSGNP
AIQATATDTA SAGAVPQIAP ASQLKEGLPG ETVTFTHTVT NIGQSDGTFT PSLTLSQGSP
WSGSLTDPSS FTLNPNDSRV VTLTVTVPNT PIPDAGTLVT ATLTVQASGG ASAAAASITR
VGLVPGFTLS AATVPTLNLP PGATAVFTHT LTNTGNGLDT FVVTATLSSG LENLTVTPSG
PFSLARGASQ QVVVQARVRD GQAVGTEQIQ VTGARVGGGV PSQTQTDTVN VQAAPGVRLS
PGQTENITPP GSVTFTHVLT NVGNVAGNFS VSASGLPAGW SVAGPTNLFP ANCLTGLAAG
ATCRFDLTVT TPLQLPQVPA GVYPFQVQAS TTSVSDAVTD TVNVLAVPQF AFTADESGSG
APDTVITFTH RLTNTGNVTD TYTFSIAVSG GGFSADPPAT VAAVPPGEGR LVPFAVRIPP
AAPAGTTGVI TLMATSAQGA PSQSVSDTVT VNEADNARLE VVGPAQQTVF TSGAPAVAIY
TLNLFNTGNT TISYTLRLNP ASLTGGWTAG VAPTLTAVLP PSATAPTPLT VQVSVPADVV
GTQAVTVEAL RGDGAGPVLA AETLTTTAQL IATGDLLTPP ENQGFGLPGE TVVYTHTLRN
VRSVADTFVF SALVPLGYEV TLPPATFLSP GEEREVSVSI RIPSGVFSNT VDAMRLSVQS
VSDPNVAADA REYTTIRQVV SAVMSPEYVR VVQAGDQVQL THQLLNTGNT TDTFVLTFTQ
TLPWNVVLRP SLRTLGPNQQ APFITLDVSV PANAPSGSVN RIRVRAQSQS DPTKVFEVEN
LFVIPVALPQ VTYEVYLPLV KR
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