| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3557 |
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| Symbol | |
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| ID | 5541058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4641640 |
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| End bp | 4643565 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640895676 |
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| Product | cytochrome c oxidase subunit I type |
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| Protein accession | YP_001433624 |
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| Protein GI | 156743495 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0739643 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTATCG CCGAACGTAC CGCCGGAACG GTCAGCCCGC CCAGCGTCAG TGTGCGCCCC
GGATGGGCCG GGTGGCTTAG CACGACCGAT CATAAGCGCA TCGGGATTAT GTATCTGGTC
AGCGCGTTCG TCTTTTTCCT GATCGGCGGA ATTGAGGCGC TGCTGATGCG CATTCAGCTT
GGCGTGCCTG ATAATACGTT CCTGACGCCC GATGTGTACA ACCAGATGTT TACCATGCAC
GGCACAACCA TGATTTTCCT TGGTCTGATG CCGCTGAATG TCGGGCTAGG CAACTATATC
GTGCCCCTCA TGATCGGTGC GCGCGATATG GCGTTCCCGC GCCTCAATGC GCTCAGCATC
TGGCTCTTCA TCTTCGGCGG ATTGATGCTG TATGTCAGTT TCTTTGTCGG CGGCGCGCCG
AACGTCGGCT GGTTCGCCTA TGCGCCCCTG ACACAGAAGC AGTTTGCACC GACCGCCGGC
GTCGATTACT GGATTATCGG CATCGGTCTG ACCGGTGTGG CGTCGATTGC CGGCGCGCTG
AACTTTATTG TAACGATTCT CAATATGCGC GCGCCAGGAA TGACGCTCAA CCGGATGCCG
CTCTTTGTCT GGATGCAGTT GGTCGTCGCC TTTATTCTGA TCTTTGCCTT CCCGGTGCTG
ACGGTGGCGA CAATTCAGTT GCTGTTCGAC CGGCATTTCG GCACGCGTTT CTTCCTTCCA
AATCTTGGCG GCGATGCAGT GCTCTGGCAG CATCTGTTCT GGTTCTTTGG GCATCCTGAG
GTCTACATTC TCATTCTCCC GACGATGGGG ATTATTTCGG AAGTGCTGCC AACCTTCTCG
CGTAAGCCGA TCTTCGGTTA TGCGTTTGTG GCGTATTCCG GTGTCGCCAT CGGTTTCCTC
GGCTTCCTGG TTTGGGCGCA CCATATGTTC GCCGTCGGTC TTGGTCCGCT GGCGAATGCG
TTCTTCGGCG CCGCAAGCTT CCTGATCGCC GTGCCAACCG GTGTGAAGAT TTTCAACTGG
CTGGCGACAA TGTGGCAGGG GTCGCTCAAC CTGACGACCT CGATGCTCTA TGCAATCGGG
TTCATTAGTA TGTTCATTAT CGGCGGCATT AGCGGCATCA CCCTCGCCTC ACCGCCGATT
AATGTTCAAC AGACCGACTC GTACTACGTT GTTGCCCATA TGCACTACGT GTTGTTCGGC
GGCGCGATCC AGGGCATCTT TGCTGGCGTC TTTTACTGGT TCCCAAAGAT GACCGGTCGG
ATGCTCAATG AACGACTTGG CAAATGGCAG TTCTGGTTGA TGCTGATCAG TTTCAACCTG
ACGTTCTTCC CGATGCACCT GAGCGGGAAT GAGGGCATGC CGCGCCGTAT CTACACTTAC
GAGGCGGAGA TGGGGTGGAA CCTCTGGAAC CTGATCTCGA CCATTGGCGC GTTGCTACTG
GCGGTTGCGT TCCTGCTCTT CCTCTGGAAT GTGCTCACGA GTATCCGGCG TGGTCCAATT
GCGCCTGCCG ATCCGTGGGA CGGGGCGACG CTCGAGTGGG CGGTCAGTTC GCCGCCGCCG
GTCTATAACT TCGCCGTGAC GCCACGGGTG CGCAGCCGCC GCCCGCTGTG GGACAAGAAG
TATCCGCACC TGCACGAGGC GAATGGGTCG CATGGGGCGC CTGCCGGTCG ACTGGCAGGA
CCCCTTGATG ACGGCTTTGA GCCTGAAACG TCTGCGGCGA TGGAGCCGAT CCATCTGCCC
TCACCCACCT ATGCGCCACT CATTGTGTCG GTTGGCATCA TGATCCTGGG CTTCGGCATC
ATTTATCTGG GTGATTTCGG TCTCATTGCA GCATCGGCAA TGCTTGTCGG CTTGCTCATC
ATGGCGACAG GCATTCTCAG TTGGGTGCGC ATCTCGCACG TTGACTCGCC GTATCAGGCG
CACTAG
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| Protein sequence | MAIAERTAGT VSPPSVSVRP GWAGWLSTTD HKRIGIMYLV SAFVFFLIGG IEALLMRIQL
GVPDNTFLTP DVYNQMFTMH GTTMIFLGLM PLNVGLGNYI VPLMIGARDM AFPRLNALSI
WLFIFGGLML YVSFFVGGAP NVGWFAYAPL TQKQFAPTAG VDYWIIGIGL TGVASIAGAL
NFIVTILNMR APGMTLNRMP LFVWMQLVVA FILIFAFPVL TVATIQLLFD RHFGTRFFLP
NLGGDAVLWQ HLFWFFGHPE VYILILPTMG IISEVLPTFS RKPIFGYAFV AYSGVAIGFL
GFLVWAHHMF AVGLGPLANA FFGAASFLIA VPTGVKIFNW LATMWQGSLN LTTSMLYAIG
FISMFIIGGI SGITLASPPI NVQQTDSYYV VAHMHYVLFG GAIQGIFAGV FYWFPKMTGR
MLNERLGKWQ FWLMLISFNL TFFPMHLSGN EGMPRRIYTY EAEMGWNLWN LISTIGALLL
AVAFLLFLWN VLTSIRRGPI APADPWDGAT LEWAVSSPPP VYNFAVTPRV RSRRPLWDKK
YPHLHEANGS HGAPAGRLAG PLDDGFEPET SAAMEPIHLP SPTYAPLIVS VGIMILGFGI
IYLGDFGLIA ASAMLVGLLI MATGILSWVR ISHVDSPYQA H
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