| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3455 |
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| Symbol | |
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| ID | 5540954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4514608 |
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| End bp | 4515894 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895573 |
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| Product | L-rhamnose isomerase |
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| Protein accession | YP_001433523 |
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| Protein GI | 156743394 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4806] L-rhamnose isomerase |
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| TIGRFAM ID | [TIGR01748] L-rhamnose isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0571898 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTCA CGACACCGAC TCCACCGCAG ATCGAAGCCG CCTATGCCGT CGCGCGCGAG
CGCTACGCGG CGCTGGGCGT CGATACCGAG GCGGCAATGG CGACTCTGGC GGCGGTCAGC
ATCAGTCTGC ACTGCTGGCA GGGGGACGAT GTCGGCGGCT TCGAGAACCC TGGCGCTCCG
CTCGAAGGCG GGATCGCCGC CACCGGCAAC TATCCGGGCA AGGCGCGCAA CGCCGACGAA
CTGCGCAGCG ATCTCGATCT GGTCTACCGA TTGCTGCCCG GTCGCCATCG GCTCAACCTC
CATGCGATCT ACGCCGAAAC GGGCGGCGCA AAGGTTGGGC GCGACGAATT GCGCCCCGAG
CACTTCGCCG CGTGGCTCGA TTGGGCAAAG GCAGGCGGGC ACGGAATTGA CTTTAACCCG
ACATGTTTCT CCCATCCGCT GGCAGCCGAT GGACTGACCC TTGCCCATCC CGATCCGGCG
ATTCGCCGCT TCTGGATCGA TCACTGCATT GCCTGTCGGC GCATCGGCGC GCATTTTGGT
CGGGCGCTGG GTACGCCGTG CATCACGAAT ATCTGGATTC CAGACGGCAT GAAAGATACT
CCGGTTGATC GGCTGGGACC ACGTCAGCGT CTGCGTGAAT CGCTTGACAC AATCCTGGCG
GAGCCGCTCG ATCCGGCGCA CAACTGTGAT GCGGTGGAAG CCAAACTCTT CGGTATCGGC
TCGGAAAGTT ACGTCGTTGG CTCGCACGAG TTCTACCTGG GGTACGCCAT CAATCGACCG
GGTTTGATCC TCTGCCTGGA TACCGGTCAT TTCCATCCGA CCGAACTCGT CTCCGACAAG
ATTTCGTCCG TTCTGCTCTA TGTGCGTGAC ATTCTGTTGC ACGTCAGTCG TGGCGTGCGC
TGGGATAGCG ATCACGTCGT GACGTTGAGC GACGAGACGC AGGCGATCAT GCAGGAGGTC
GTGCGTGGCG GGTTTCTGCC GCGCACCCAC ATCGGGCTGG ACTTCTTCGA TGCCAGCATC
AACCGGATTG CTGCCTGGAC AATCGGCGCG CGCAATGCGC TGCGCGCTCT GCTGCTGGCG
CTCCTCGAAC CAACCGACCG GCTGCGCGAA CTGGAGTTGA TCGGTGATAC GACGGCGCGC
CTCGCTCTGC TCGAAGAGTT GAAAGGCATG CCGTGGGGAG CGGTCTGGGA TGTCTATTGC
TACCGCCACG ATGTGCCGGT GGGCGCGAGT TTTCTGAACG AGGTGCGCCG GTATGAAGCC
GACGTGCTTG CAGCGCGGCG TCCGTGA
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| Protein sequence | MTFTTPTPPQ IEAAYAVARE RYAALGVDTE AAMATLAAVS ISLHCWQGDD VGGFENPGAP
LEGGIAATGN YPGKARNADE LRSDLDLVYR LLPGRHRLNL HAIYAETGGA KVGRDELRPE
HFAAWLDWAK AGGHGIDFNP TCFSHPLAAD GLTLAHPDPA IRRFWIDHCI ACRRIGAHFG
RALGTPCITN IWIPDGMKDT PVDRLGPRQR LRESLDTILA EPLDPAHNCD AVEAKLFGIG
SESYVVGSHE FYLGYAINRP GLILCLDTGH FHPTELVSDK ISSVLLYVRD ILLHVSRGVR
WDSDHVVTLS DETQAIMQEV VRGGFLPRTH IGLDFFDASI NRIAAWTIGA RNALRALLLA
LLEPTDRLRE LELIGDTTAR LALLEELKGM PWGAVWDVYC YRHDVPVGAS FLNEVRRYEA
DVLAARRP
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