| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3454 |
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| Symbol | |
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| ID | 5540953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4512026 |
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| End bp | 4514218 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895572 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001433522 |
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| Protein GI | 156743393 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.117557 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCA ACCCATCGCG ATTCCGCCAC GTTCATGACG GCTGGGACGA CGCCTGTGCC
GCGACGCTCG ATCCGGTCGG GCGGCTGGTC TATCGTTCTA ACCTGCTGGG CAGCGATCAG
CGCATCACCA ATACCGGCGG CGGCAACACA TCGGCGAAGA TCATGGAACG TGATCCGTTG
ACCGGCGAGT CGGTCGAGGT CTTGTGGGTC AAGGGGTCCG GCGGCGACCT GCGCACGAGT
ACGCGGGCGA ACTTTGCTTC GCTCGATCTG AAAAAACTCT TCACGCTGCG CTCGATCTAC
CTGCGCGATC CGTTGCGCGG GCCGAAGAGC GCCGCCGAAG ATGCAATGGT CAATCTCTAT
CCGCACTGCA CGTTCAACCT GAATCCGCGT GCTTCTTCGA TTGATACGCC GCTCCACGCC
TTCATTCCCT ACCGCCACGT CGATCACATG CATCCGAATG CGGTGATCGC CATCGCTGCT
GCGCGCAACG GCGAGCGCCT GACCCGCGCG ATCTATGGTG ATGAAGTGAT CTGGACGCCC
TGGCAGCGTC CCGGTTTCGA TCTCGGACTG ACGCTCGAAC GCATTTGCCG CGAGCATCCG
CAGGCGCATG GGGTGATCCT GGGCGGGCAT GGGTTGATCA ACTGGGCTGA TGATGACCGG
GAGTGCTACG AGCGTACCCT CGATCTGATC GAGCGCGCCG CCACGTACAT CGAGGAGCGC
GACCGCGGCG CTGCAACGTT CGGCGGACCG AAGTGCGAAG CGTTGCCGTT CGACCGCCGA
CGCGCGGCAT TTGCGACCAT TCTGCCCTGG CTGCGCGGTC AGATCAGTCG GGAGCGACGG
TTCATTGCGA CGATTCAGGA CGATGACGCC ACGCTGCGCT TTGTCAACAG CGTCGATGCG
CCGCGTCTGG CGGAACTGGG AACCAGTTGC CCCGACCATT TCCTGCGCAC AAAAATCAAG
CCGCTCTATG TCGATTGGCA TCCGCACAAC GAAACGCTCG ACGACCTGAA GCGCAAACTG
TCGGATGGGC TGGAACGGTA TCGCGCCGAT TACACGCGCT ACTACGAGAC CTTCCGCCAT
AGCGACTCGC CGCCGATGCG CGATCCCAAC CCGACGGTCG TTCTGATCCC TGGTTTGGGC
ATGATCGCCT GGGGCAAGGA CAAGAGCGAG TCGCGGGTCA CGGCGGAGTT CTACACCGCT
GCCATCGAGG TGATGCGCGG CGCCGAAGCG ATTGATGAGT ATGTCGCGCT ACCGCTGCAA
GAGGCGTTCG ATATCGAATA CTGGCAATTG GAAGAGGCGA AACTGCGCCG GATGCCGCCG
GAGAAAGAAC TGGCGCGGCA GGTGATCGCC GTCATTGGCA GCGGCAGCGG CATTGGGCGC
GAGGTCGCGC TACGCCTCGC CGATGAGGGC GCCCACGTGG TGTGCGTCGA TAAGGACGAA
GCCGCCGCCA GTGCAACCGC GCAGATGATT ATCGACCGGC ACGGCATGGG CATCGGCGTG
GCGGGTAGTG ACATTTCCGC CTGCGGACCG GCGATCAACC TGGCTGCCGA CATTACGGAT
CGCGACAGTG TGCGCCGTAT GGTGCAGCAC CTTCTCCTCG CCTACGGCGG ACTCGATGCG
GTTGCGATCA CGGCGGGCAT CTTCGTGGCG CCCGATGTGG AAGGACGCAT CCGTGATGAT
CAGTGGGCGC TCACCTTCGC AATCAATGTT ACCGGGCAGT ATATCGTCGC CGATGAAGCC
GCAGCGATCT GGCGCGCGCA GGGGTTGCCC GCCAGCCTGG TGCTGACTAC CTCGGTCAAT
GCGGTGGTGG CGAAAAAGGG TTCGCTGGCA TACGATACAA GCAAAGCTGC CGCCAACCAT
CTTGTGCGCG AACTGGCGAT CGATCTTGCC CCGCTGGTGC GGGTCAACGG TGTCGCGCCG
GCGACGGTTG TGCAAGGGAG CAGCATGTTC CCCCGCGAGC GGGTGATAGC ATCGCTCACC
AAGTACGGCA TTCCCTTCAA GCCGGATGAA CCGACCGGGG CGTTGACGGC GAAACTGGCG
CAGTTTTACG CCGACCGATC GCTGCTCAAG CGACCCGTGA CGCCGACCGA TCAGGCGGAA
GCCTTCTTCC TCTTGCTCAG CCGGCGACTG GGACAGACAA CCGGCCAGAT CATCACGGTG
GACGGCGGGT TGCACGAAGC ATTCCTGCGG TGA
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| Protein sequence | MSANPSRFRH VHDGWDDACA ATLDPVGRLV YRSNLLGSDQ RITNTGGGNT SAKIMERDPL
TGESVEVLWV KGSGGDLRTS TRANFASLDL KKLFTLRSIY LRDPLRGPKS AAEDAMVNLY
PHCTFNLNPR ASSIDTPLHA FIPYRHVDHM HPNAVIAIAA ARNGERLTRA IYGDEVIWTP
WQRPGFDLGL TLERICREHP QAHGVILGGH GLINWADDDR ECYERTLDLI ERAATYIEER
DRGAATFGGP KCEALPFDRR RAAFATILPW LRGQISRERR FIATIQDDDA TLRFVNSVDA
PRLAELGTSC PDHFLRTKIK PLYVDWHPHN ETLDDLKRKL SDGLERYRAD YTRYYETFRH
SDSPPMRDPN PTVVLIPGLG MIAWGKDKSE SRVTAEFYTA AIEVMRGAEA IDEYVALPLQ
EAFDIEYWQL EEAKLRRMPP EKELARQVIA VIGSGSGIGR EVALRLADEG AHVVCVDKDE
AAASATAQMI IDRHGMGIGV AGSDISACGP AINLAADITD RDSVRRMVQH LLLAYGGLDA
VAITAGIFVA PDVEGRIRDD QWALTFAINV TGQYIVADEA AAIWRAQGLP ASLVLTTSVN
AVVAKKGSLA YDTSKAAANH LVRELAIDLA PLVRVNGVAP ATVVQGSSMF PRERVIASLT
KYGIPFKPDE PTGALTAKLA QFYADRSLLK RPVTPTDQAE AFFLLLSRRL GQTTGQIITV
DGGLHEAFLR
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