Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3180 |
Symbol | |
ID | 5540678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4128955 |
End bp | 4130049 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640895301 |
Product | peptidase M20 |
Protein accession | YP_001433252 |
Protein GI | 156743123 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.689816 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATG CCTCAGTACA GCACGAACTG ACCCGCCTGA CCTGTAACCT GATTGCGTTC CCTTCGACCG CCGACCATCC CGATGCACTG ATCGCCGCAA TTGATTATGT CGAGCAGTAC GCTCGTGATT CGGGCATCCA GTTTATTCAC CGTTTCGAAG TCGAACAGAA GCCCAGCCTG ATGATCACCC TGCGCGACAC GCAAAGGCCA GCGCTCATCC TCAACGGTCA CCTCGATGTG GTCGCCGCGC GCGCTGAACA GTATCAACCG GTCGTGCGCG ACGGACGGAT CTACGGACGC GGCAGCCAGG ACATGAAAGG CGCGTGCGCC GTTCTTATGC GCCTGATACG CGATCTGGCT GCGCTTCCGG ATCCACCCGA CGTTGGGTTT ATGTTTGTCA CCGATGAAGA AATCGGCGGG TTCCATGGCA CCAACTACCT GCTGGAACAC GGGTGGCGCT CTGCGTTCTT CATCGCTGCC GAGCCGACCG ATCTGAACAT CTGCTATGCC GCCAAGGGCA TGGTGCGCTT CGACATCACC TTGCACGGAC AACCGGCGCA CGGTTCGCGC CCGTGGGAAG GGGTTAATCC GATCCTTCTG CTGCGCGACG GGTTACAGGC GCTCGAACAA CGCTTCCCAA CGCCGCGCGA AGCAGTGTGG GCAACAACCG CCGTCCCTAC CGTGGTTCGT GGCGGTGATA CACTCAACCG CATTCCAGAG GTGGTGACGC TTTCACTCGA CATTCGCCAC ATTCCTGAAG AAACCCCAGA CGAGATCGAG GCGGCGGTGC GCGCCTGCTT CCCCGGCGCA ACGGTTGCGC GCAACAGCAC AGGCGGCATC CCGCTGATGA CCGACCCCAA CGATCCGCAC CTGGCGCAGT TGGCTGCCAG CATTGAGCGC ATCATCGGGC GTCAACCGGT CTTCTACCGT GAGCACTATG GCTCAGATGC GCGCTTCTAT AGCGGCGCGG GCATTCCGGC AATCTGCTTT GGACCGGTGG GCGCAGGGCT GCACTCTGAT CATGAATGGG TGGATATCGC CAGCCTGGAG CGCCTGTATC TGATCCTGCG CGATGTTGCG ACGGCAGCCG AGTGA
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Protein sequence | MNDASVQHEL TRLTCNLIAF PSTADHPDAL IAAIDYVEQY ARDSGIQFIH RFEVEQKPSL MITLRDTQRP ALILNGHLDV VAARAEQYQP VVRDGRIYGR GSQDMKGACA VLMRLIRDLA ALPDPPDVGF MFVTDEEIGG FHGTNYLLEH GWRSAFFIAA EPTDLNICYA AKGMVRFDIT LHGQPAHGSR PWEGVNPILL LRDGLQALEQ RFPTPREAVW ATTAVPTVVR GGDTLNRIPE VVTLSLDIRH IPEETPDEIE AAVRACFPGA TVARNSTGGI PLMTDPNDPH LAQLAASIER IIGRQPVFYR EHYGSDARFY SGAGIPAICF GPVGAGLHSD HEWVDIASLE RLYLILRDVA TAAE
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