Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3153 |
Symbol | |
ID | 5540651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4091527 |
End bp | 4094799 |
Gene Length | 3273 bp |
Protein Length | 1090 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640895274 |
Product | peptidase S41 |
Protein accession | YP_001433225 |
Protein GI | 156743096 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG0793] Periplasmic protease [COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGACG ATCGGTATGT TATCCGTCCC TACTTTCGCG CGCCCTCGAT TGATCCCGCC GGCAGTCGTA TCGCATTCGT CTATGCAGGC GACATCTGGC TTGTTGATGT CAGCGGCGGG CAAGCCGAGC GACTGACCGC TCATCCTGCA AATCACATGC TGCCGCGCTG GTCGCCGGAT GGTTCAGCCA TCGCCTACAC CTCATCTCGC ACCGGACAGG GCGACGTGTA TGTGCTGCCG CTCAACGGCG GCGAGGTGCG ACGGATCACA TATCACGAGG CGCAGAGCGC CGTCGAGTGC TGGTCGCCTG ACGGCGCTGC CATCTATTTC ACCTCTCAAC GCGAGCGCCA GGGCGCCGCG ATCTATCGCA TCGCCGCATC AGGCGGTACG CCGGTTCGCT GGATTGCACA ACCATACGAG CGCCTCGGCA CAGTCGCGGT TTCACCCTGT GGTCGCTGGC TGGCATTCAG CCTGATGCGC GATCTGTGGT GGCGACGGGG ACCGAATCCG TATGGCGGCG CAGAACTCTG GCTGGTATCG AATGCGCCTG ACGCCGATGA TTTCTTTCAA TTGAGCGACG CGCCCGGTAT GAATTACTGT CCCATGTGGT CGCCCGATAG TCAGTTGATC TTCTTTGTTT CTGATCGCGA TGGAAGCGAA AATCTGTGGG TGGCGCCGCG AGAGGGAGGC GTCGCAGAGC GCATCACGGC ATTCACCGAC GGGCGCCTGC TCTGGCCCTC GATCAGCGCC GATGGCAGAA TGATCGCATT CGAGCGTGAT TTTGGCATCT GGACGCTCGA TCTCGCTTCC GGTGCAACCA CGCGCGTCCC GATTCAGGTG CGCCAGGATA CCAAAGTGAC GCCGGTGCGG GTGCAGACCT ACACGCGCGA TGCAGGTGAA CTGGCGCTCT CGCCCGATGG AAAGAAAGTC GCCTTTACGG TGCGCGGGAA GATTTTCGCC GATTTTGCCG AAAAGGAAAC GGAACGCGAT CAGCGCCACG GGCCGGCCTA TCGCATCTCG CACACGGCAT TCCGCGATAG CGATATTGCC TGGTCGCCCG ACAGCCGGCG CCTGGTCTAT GTTTCTGATC GTCACGGCGA CGAAGAAGTG TACTGCTACG ATTTCCTCGC GCGCAGCGAA ACCCGCCTGA CGTTTGGAGC GAAACGTAAG AGCGCGCCTT GTTTCTCGCC TGATGGGCGC TGGATTGCAT ATGCAAGCGG TGATGACGAA ATCCGGCTGA TCGAGGTCTC AAGCGGAGAG GATCGCCCAT TTATTCGGGC ATACTTTGTC TTTGGCGCAT CGTTCGCCTG GTCTCCCGAT AGTCGCTGGC TGGCATTCTG CGCTCAGGAC GAACGGTTTT TCAGCAATGT GTACGTGCAA CATATCGAGG AAGAACAGGC GCATCAGATT TCGTTCCTCA GCAATCTCCA GGCGGCAGGA CCGCTGTGGT CGCCTGATGG ACGCTTTCTT GTCTTCACGA CCGGACAGTA TCGCGCCGAG TCGCAGATCG CGCGCATCGA TCTGCAACCT CAACCACCGG TGTTCCGTGA GACGGAGTTC GAGCGGTTGT TTGAATTGCA CAAAAGTGAT TGTCGGGACA AACAGACGGC TGGACCGCCA TCCACAGTCG GACCGCCCCA TACGCGCAGT GCAGACGCCG ATCGTGAGCC ACAACCGATG GTTGTTCCTG TCATCGAACC GGATGATGAG TCCGACCGCG CTGCTCGTCA GCATAACGCG CCATCCAGGT TATCCAGATC CACGTCACCG AGCGAGATAA CAATTGTGTT CAACGGTATC GAACGCCGGT TGCGCCTGTT GACGCCACCG CAAATGGATG CCATTGCATT GTGTATCAGC CCGGACGGAC GCGATCTCGT GTGCAGCGCC ACCATTGCGG GGCGGCAGAA TCTCTGGACA TTGCCGCTTG ATGAGCCGCG CGCCGGTCAG GGACCGCGCC AGTTGACCAG CACTCCGGGC ACGAAATCGT GTGCCTGCTT CACACCTGAT GGGAAACAGA TCTATTTCCT TGATGGTGGA ACCATCGCGC TGCGAAAGTT TCCGAAGGGA GAACAGACGA CGTTGCCCGT ATCGGCTGAG GTGGTTGTCG ATTTCACACA GGAAAAGCGG CAGATATTCG AAGAGTGCTG GCGGTTGCTG CGCGATTGCT TTTACGATGA GCGCTTTCGC GGCATCGACT GGAAAACGAT ACACGACCGG TATGCGCCAC TGATCCAGGG GGCGCAGACC CCTCCTGAAG TGTATCTCTT GATCAACCTG ATGGTCGGAG AACTCCGTTC TTCACACGTT GGATTGTTCA GAAGCGACGG GAATGGCGGT CAGGACGGCT ACCTCGGCAT CACGCTCGAT ACCATCGAAT ATCTGCGCAG CGGTCAATTC CGCGTTGCCG GGGTTATTCC CGACGGCCCG GCGGCAGTCG CCCACAATGG TGCGCTTCAA CCCGGTGATG TGTTGCTGGC AGTCAATGGC GTCGCATTGA AACCGGAAAC ATCGCTCGAT GCGTTGTTGC AACGCACGGC GGGCCAGCGG GTTATTCTGC GTGTGGTCAA TCCTGCCGGC GAGCAGCGCG ATGTCGAGGT GCGCCCCATC ACGGCGGAAC AGTATGACTG GTTGCGATAC CGGGCATGGG TGCTTGAAAA TGAACAGATC GTTCATCGGG CGAGTAACGG GCGCATCGGC TATGTGCACA TTCGTAAGAT GAGTTACGAT GCATACCAGC AGTTCCTGAC CGATCTCGAT GTCGAAATGC ATAACAAAGA AGGCTTGGTC GTCGACATCC GCTTTAACTC AGGCGGGCAT ACGGCAACGT TTATTCTCGA TGTTCTGATG CGTCGCAGCG TTCTGTTCAG CGCCTTTCGC AATCGCTCTG TCGCCGATTC GTCGCATATC TTTGGCAATC GTGTGCTGAA CAAGCCGACG GTGCTGGTGA CGAACGAGGC ATCGAGTTCT AATGCAGAAA CCTTCAGCGA ATCGTACCGT CGCCAGGGTC TGGGGAAGGT GGTCGGAAAA CCAACGGCTG GCGCGGTTAT CGGCACGTTC ACTCGACTCC TGATTGATGG GACATCGCTC CGGTTGCCGC AACTGCGGGT CACGACACCT GAAGGCGAAG AGCTGGAAGG GCGCGGTCGA CCGGTAGACG TCGATGTGCC GCTGCGACTG GGGGAGTGGC GCTATGGGCG TGATGCTCAA CTCGAGGCGG CAGTGCGCGT GTTGCTCGCC GATCTCGATG GGCCGGACCA TCATATCGAA TAG
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Protein sequence | MTDDRYVIRP YFRAPSIDPA GSRIAFVYAG DIWLVDVSGG QAERLTAHPA NHMLPRWSPD GSAIAYTSSR TGQGDVYVLP LNGGEVRRIT YHEAQSAVEC WSPDGAAIYF TSQRERQGAA IYRIAASGGT PVRWIAQPYE RLGTVAVSPC GRWLAFSLMR DLWWRRGPNP YGGAELWLVS NAPDADDFFQ LSDAPGMNYC PMWSPDSQLI FFVSDRDGSE NLWVAPREGG VAERITAFTD GRLLWPSISA DGRMIAFERD FGIWTLDLAS GATTRVPIQV RQDTKVTPVR VQTYTRDAGE LALSPDGKKV AFTVRGKIFA DFAEKETERD QRHGPAYRIS HTAFRDSDIA WSPDSRRLVY VSDRHGDEEV YCYDFLARSE TRLTFGAKRK SAPCFSPDGR WIAYASGDDE IRLIEVSSGE DRPFIRAYFV FGASFAWSPD SRWLAFCAQD ERFFSNVYVQ HIEEEQAHQI SFLSNLQAAG PLWSPDGRFL VFTTGQYRAE SQIARIDLQP QPPVFRETEF ERLFELHKSD CRDKQTAGPP STVGPPHTRS ADADREPQPM VVPVIEPDDE SDRAARQHNA PSRLSRSTSP SEITIVFNGI ERRLRLLTPP QMDAIALCIS PDGRDLVCSA TIAGRQNLWT LPLDEPRAGQ GPRQLTSTPG TKSCACFTPD GKQIYFLDGG TIALRKFPKG EQTTLPVSAE VVVDFTQEKR QIFEECWRLL RDCFYDERFR GIDWKTIHDR YAPLIQGAQT PPEVYLLINL MVGELRSSHV GLFRSDGNGG QDGYLGITLD TIEYLRSGQF RVAGVIPDGP AAVAHNGALQ PGDVLLAVNG VALKPETSLD ALLQRTAGQR VILRVVNPAG EQRDVEVRPI TAEQYDWLRY RAWVLENEQI VHRASNGRIG YVHIRKMSYD AYQQFLTDLD VEMHNKEGLV VDIRFNSGGH TATFILDVLM RRSVLFSAFR NRSVADSSHI FGNRVLNKPT VLVTNEASSS NAETFSESYR RQGLGKVVGK PTAGAVIGTF TRLLIDGTSL RLPQLRVTTP EGEELEGRGR PVDVDVPLRL GEWRYGRDAQ LEAAVRVLLA DLDGPDHHIE
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