| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3142 |
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| Symbol | |
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| ID | 5540640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4072871 |
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| End bp | 4074361 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640895263 |
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| Product | tRNA/rRNA methyltransferase (SpoU) |
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| Protein accession | YP_001433214 |
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| Protein GI | 156743085 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0566] rRNA methylases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0306284 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTC GTCCAAACCG GATGTCGGGG ATTGCCCCCG CACAGAAGAA GCGGCGACAG
AAGGACCTCT GCCAGCACGA TGCGTGGTGT CCCATCGCCC CGAGGCGCTA CGCATCACGC
CTGCAATCCC AGGAAGAGCG TAGACAATTC CAGAAGGAGA GATGTGTGGC TGTCGTTATC
GAAAACCCCG ACGCCGCCCG CTCAGCGCTG ATCGACCTGC TGCGCCGGGA ATATACGGTT
GACCACGATG CCCTGATCGC CGATGTTTTC GGCGCCGACC AGGCAGGGCT GTGCGTTCTC
GCGTCGGGGT GGGGAAGCAT CGAAGGCGTG CTGGCATCCC AACCGGAGAC GCGCTGTGCC
GCCACAACGC GCGCACTAGT CGTTGCTGCT CACGAACGCG CACTGCGCGA CCTCCTGCTT
GCTGCGCCAC GCGGCGATGT GCTCCTGTTC CTGGTCGTCG GCAATTGGAC GCTGCCAACG
CTTGCTGAGT TGTTCGATGG GCGCGAAGTC GCGCCGTACC CACTGTTGAG TTACCCCGGC
ATCCACCTCT TTGTGGGAGT TCGTCGTGGC AGCGGAGCGC TTCCTGTGAT CGACGACAAC
ACCTTGTTTC GTGGCCCGCC CCTGGCGCAC GCCGCCCTGC CGCGCCCGGC CGGCGGGCAG
AACCTCAGTA GCGCCAGAGA CCCGATGGTC GCCCGTTTGC GCGACCTTGG CAATGCAGCA
GGGCGGCGCG CGCGCGGCCA ATTTCTTGCC GAAGGACCAC TCCTCGCCTT CCGCGCCCTC
GATGATCTGC CGGTCGAAGA CCTGTTCTAT ACCGGCGAGT TGCTGCGCGA CCCGGCAGGC
ACAGTGTTGC TTCGGCGCGC GGCAGACCTC GGCGTACCTG CGCACCGCAT CTCCGAAGGG
CTGATGGGGC TGATCACTCC CACCCGCCCA ATCCCCAGCG TCATCACTGC GATCTGGGGA
CAATTGCGCA ACGTCGCCGA CTACCGACCC GGCAGGCGCG CCGTTATTCT AGCGACCGAG
CAGATCAACA ATCCCGAAAA CCTGGGCATG ACGCTGCGCA CTGCCGACGC CGCCGGGGTC
GAGGCAGTGA TCGTGGCGGG CAGCGGCGCC GATCCATTCC ACCGCGAATG TGTACGCGCT
GCGCGCGGCG CCGTGGGGCG CATCCCGATC TATACCTGCG CCGATCTCCC CACCTGGGTC
GGTCAGGCAC GCGCACGGGG CATCCACGTC GTCGGCGCAA CCGGCAACGT CGAGCGCACC
CTGTACGACG CCGATCTGCC ATTACCGCTG ATGATCATCG TCGGGAACGA AACCGAGGGT
CTGACCGACG CGACGCTGGC GGTCTGCTCG TCGCTCGTGC GCATCCCGAT GGCGCCGGGG
CAGGACTCAT TGAACGTCGG CGTAGCAGCG GGGGTGATCC TGTACGACAT CGTGAGGAGG
AGGTTATGTG ACCGTCACCT CGCGCCGACC AAAAACCCAA CCACTGCCTG A
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| Protein sequence | MSSRPNRMSG IAPAQKKRRQ KDLCQHDAWC PIAPRRYASR LQSQEERRQF QKERCVAVVI
ENPDAARSAL IDLLRREYTV DHDALIADVF GADQAGLCVL ASGWGSIEGV LASQPETRCA
ATTRALVVAA HERALRDLLL AAPRGDVLLF LVVGNWTLPT LAELFDGREV APYPLLSYPG
IHLFVGVRRG SGALPVIDDN TLFRGPPLAH AALPRPAGGQ NLSSARDPMV ARLRDLGNAA
GRRARGQFLA EGPLLAFRAL DDLPVEDLFY TGELLRDPAG TVLLRRAADL GVPAHRISEG
LMGLITPTRP IPSVITAIWG QLRNVADYRP GRRAVILATE QINNPENLGM TLRTADAAGV
EAVIVAGSGA DPFHRECVRA ARGAVGRIPI YTCADLPTWV GQARARGIHV VGATGNVERT
LYDADLPLPL MIIVGNETEG LTDATLAVCS SLVRIPMAPG QDSLNVGVAA GVILYDIVRR
RLCDRHLAPT KNPTTA
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