| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3104 |
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| Symbol | |
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| ID | 5540600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4022421 |
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| End bp | 4023110 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895223 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001433176 |
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| Protein GI | 156743047 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3944] Capsular polysaccharide biosynthesis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.466089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTCTGT CAACGTTCAT CCGCGTTCTG ATCCGCAACT GGTGGCTGGT GGTGCTGGCA
ACGGCGCTGA CGGTGGGGAG CACCGCTGTG TTTGTGTTGG TGCAGAAACC GGTGTATCAG
GCGTCCACAA CGGTCGAGTT GAAACCCAGC GTATCGCTCG AGGACCCCAA TCAGATTCTG
AACACCATCA ACGCGCTTAC CCGGCGGAAT GTCATCAACA CCATCGCGCG CAAAGCCACG
AGTATGTCGA TGCACGAAGA AGTGGCGCAG CAGCTTGGCG TGCCGGTCGA AGCCGTGCTC
GCGGCGCAGG TGCGCACCAT TACCCCGCCG GAGACAAACC TGATCGAAGT GCGCGCGCAG
AGCGCCGATC CTGTGTTTGC GGCGGCAGTG GCGAATACGG TGGCGCGCAA CATGGTGGGG
CAGGACTACG AAAAGGTGAT CTCTGTCGAG GTGATCGATC CGGCGACGCC GCCAACATCG
CCGATTGCGC CGCAACCGAT GCGTTTGCTG ACGCTGGGCT TTGTGTTCGG TTTGATCCTC
GGCGTGGCGT TTGCGTTCCT GGAGCAAGTG TTGCAGGGTC TGCGCACAGG CGCCGATACG
TCTGGGGTGA TGATCGGCGC GGCGCAACAA CCTGCGCTCT CGACGGTCGA GGCTGCGATT
CCATCTCCGG CGCCATCAAC GGAAGAATAA
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| Protein sequence | MSLSTFIRVL IRNWWLVVLA TALTVGSTAV FVLVQKPVYQ ASTTVELKPS VSLEDPNQIL
NTINALTRRN VINTIARKAT SMSMHEEVAQ QLGVPVEAVL AAQVRTITPP ETNLIEVRAQ
SADPVFAAAV ANTVARNMVG QDYEKVISVE VIDPATPPTS PIAPQPMRLL TLGFVFGLIL
GVAFAFLEQV LQGLRTGADT SGVMIGAAQQ PALSTVEAAI PSPAPSTEE
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