| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2959 |
|---|
| Symbol | |
|---|
| ID | 5540450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3839281 |
|---|
| End bp | 3840177 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895079 |
|---|
| Product | peptidase C60 sortase A and B |
|---|
| Protein accession | YP_001433037 |
|---|
| Protein GI | 156742908 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0608881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000198401 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATA TTGCTCGCAA CAACCGCATC TCCCTGCAAA CCCCGCCGAA GATTCGGGGT
CTGTCGCTCT TGCGGCGCGC ATCCGGTCGA AATGCCGTGC CGACGACATT CCGCGAAAAA
CTCTTCTGGA CCCTGGGCAA TCTGCTGATG CTGATCGGCG CCATTCTCCT GGCGTATGTC
GGCGGCATCT ACGCACAGGC CGATTTCAAC CGCTATGCCG CGCGTGGCGA TACCGACGTG
CCGCCGCCTG CGCCCGTCGC GGCGCCACGC GCTCCCGATG CAGAACCGGC GCCCTTCGTC
GCGCCGCAGC CCTTCGTCGC GCCACGCCTC AACACCGTTG AGGGGCGCAT CATCAGCGAC
GTGCCGGACA TCGTCAGGTC CGCTATCCCG TCGCAGATTT CACGCATCAT TATTCCGAGT
ATCGGCGTCG ACTCGAAAGT CGTCGAGGTC GGCTGGGAAG TCAAGGAACA GAACGGAACG
CAGGTCGCAG TCTGGCAGGT CGCCGAGTAC GCCGTTGGTC ACCATCGAGG CTCTGCCAAC
CCTGGCGAAG GGAGCAACAT CGTGCTTGCC GGTCATGTTG GCGGGTACGG CAAAGTTTTC
AAAGACCTGA TTAACGTCAG GGAGGGCGAC CCGATCATCC TCTTCGCTGG CGGACGGCAG
CACCTCTACG TGGTGCGTGA GCAGGTTCTG GTGCACGAAG AAGGGGTCTC ACCCGAACAA
CAGGCAATGA ATGCCCTCTA CATCGCTCCA ACGAGTGAAG AGATGGTGAC GCTCATCACC
TGCTGGCCCG ACCGCGGACC GGACAAGTTC AAGTACCGCA TCATCGTGCG CGCCACACCC
TACGGCGCCG ACACCGATAC CCCGACCACC AACGCCGATG GTTGGACGGT GCGCTGA
|
|---|
| Protein sequence | MKHIARNNRI SLQTPPKIRG LSLLRRASGR NAVPTTFREK LFWTLGNLLM LIGAILLAYV
GGIYAQADFN RYAARGDTDV PPPAPVAAPR APDAEPAPFV APQPFVAPRL NTVEGRIISD
VPDIVRSAIP SQISRIIIPS IGVDSKVVEV GWEVKEQNGT QVAVWQVAEY AVGHHRGSAN
PGEGSNIVLA GHVGGYGKVF KDLINVREGD PIILFAGGRQ HLYVVREQVL VHEEGVSPEQ
QAMNALYIAP TSEEMVTLIT CWPDRGPDKF KYRIIVRATP YGADTDTPTT NADGWTVR
|
|---|
| |